Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   CFE88_RS11135 Genome accession   NZ_CP022247
Coordinates   2234338..2235234 (+) Length   298 a.a.
NCBI ID   WP_088922888.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain AMT     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2229338..2240234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFE88_RS11115 (CFE88_11115) - 2230023..2231567 (+) 1545 WP_070592540.1 NAD(P)H-binding protein -
  CFE88_RS11120 (CFE88_11120) - 2231691..2233160 (-) 1470 WP_002501359.1 alkaline phosphatase -
  CFE88_RS11125 (CFE88_11125) - 2233457..2233642 (+) 186 WP_088922831.1 hypothetical protein -
  CFE88_RS11130 (CFE88_11130) braR 2233667..2234332 (+) 666 WP_002447011.1 response regulator transcription factor Regulator
  CFE88_RS11135 (CFE88_11135) braS 2234338..2235234 (+) 897 WP_088922888.1 sensor histidine kinase Regulator
  CFE88_RS11140 (CFE88_11140) - 2235345..2236094 (+) 750 WP_088922832.1 ABC transporter ATP-binding protein -
  CFE88_RS11145 (CFE88_11145) - 2236096..2238108 (+) 2013 WP_088922833.1 ABC transporter permease -
  CFE88_RS11150 (CFE88_11150) - 2238212..2238802 (+) 591 WP_193791298.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34931.50 Da        Isoelectric Point: 6.3047

>NTDB_id=237725 CFE88_RS11135 WP_088922888.1 2234338..2235234(+) (braS) [Staphylococcus epidermidis strain AMT]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEYELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDTQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNQGTVFFIHFTEEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=237725 CFE88_RS11135 WP_088922888.1 2234338..2235234(+) (braS) [Staphylococcus epidermidis strain AMT]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTATTTTCTTTACCTTTTGATGCATACGTACTAGCAATCAGTATCATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAACGAACATCTTAAAGATAAAGTGGCATATTTAGAATATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAATGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGCCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGGCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
CATTTTAACCGATACACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATATGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACCGGTATAGGTTTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAGTTAAATCAGGGGACAGTATTTTTTATACATT
TTACTGAAGAAAAATAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60.339

98.993

0.597

Multiple sequence alignment