Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I3Q_RS05525 Genome accession   NZ_CP028112
Coordinates   1075082..1076509 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli O103 str. RM8385     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1070082..1081509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3Q_RS05495 (I3Q_05495) yeeZ 1070137..1070961 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  I3Q_RS05500 (I3Q_05500) yeeY 1071007..1071936 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I3Q_RS05505 (I3Q_05505) yoeI 1072151..1072213 (+) 63 WP_010723108.1 membrane protein YoeI -
  I3Q_RS05510 (I3Q_05510) plaP 1072203..1073561 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I3Q_RS05515 (I3Q_05515) tsuA 1073740..1074798 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  I3Q_RS05520 (I3Q_05520) tsuB 1074812..1075039 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I3Q_RS05525 (I3Q_05525) sbcB 1075082..1076509 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  I3Q_RS05530 (I3Q_05530) dacD 1076718..1077884 (+) 1167 Protein_1033 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I3Q_RS05535 (I3Q_05535) sbmC 1078003..1078476 (+) 474 WP_001105383.1 DNA gyrase inhibitor SbmC -
  I3Q_RS05540 (I3Q_05540) yeeA 1078674..1079732 (+) 1059 WP_001200891.1 FUSC family protein -
  I3Q_RS05545 (I3Q_05545) tmaR 1079904..1080233 (+) 330 WP_000450409.1 DUF496 family protein -
  I3Q_RS05550 (I3Q_05550) - 1080334..1080516 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I3Q_RS05555 (I3Q_05555) - 1080570..1080716 (+) 147 Protein_1038 transposase domain-containing protein -
  I3Q_RS31635 (I3Q_05560) - 1081005..1081085 (-) 81 Protein_1039 hypothetical protein -
  I3Q_RS05565 (I3Q_05565) yeeW 1081131..1081325 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=237717 I3Q_RS05525 WP_000980608.1 1075082..1076509(-) (sbcB) [Escherichia coli O103 str. RM8385]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=237717 I3Q_RS05525 WP_000980608.1 1075082..1076509(-) (sbcB) [Escherichia coli O103 str. RM8385]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581