Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I3S_RS22895 Genome accession   NZ_CP028110
Coordinates   4357460..4358887 (-) Length   475 a.a.
NCBI ID   WP_000980611.1    Uniprot ID   -
Organism   Escherichia coli O121 str. RM8352     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4352460..4363887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3S_RS22865 (I3S_22850) yeeZ 4352515..4353339 (+) 825 WP_000754721.1 SDR family oxidoreductase -
  I3S_RS22870 (I3S_22855) yeeY 4353385..4354314 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I3S_RS22875 (I3S_22860) yoeI 4354529..4354591 (+) 63 WP_010723108.1 membrane protein YoeI -
  I3S_RS22880 (I3S_22865) plaP 4354581..4355939 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I3S_RS22885 (I3S_22870) tsuA 4356118..4357176 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  I3S_RS22890 (I3S_22875) tsuB 4357190..4357417 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I3S_RS22895 (I3S_22880) sbcB 4357460..4358887 (-) 1428 WP_000980611.1 exodeoxyribonuclease I Machinery gene
  I3S_RS22900 (I3S_22885) dacD 4359096..4360262 (+) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I3S_RS22905 (I3S_22890) sbmC 4360381..4360854 (+) 474 WP_001105411.1 DNA gyrase inhibitor SbmC -
  I3S_RS22910 (I3S_22895) yeeA 4361053..4362111 (+) 1059 WP_001200882.1 FUSC family protein -
  I3S_RS22915 (I3S_22900) tmaR 4362283..4362612 (+) 330 WP_000450409.1 DUF496 family protein -
  I3S_RS22920 (I3S_22905) - 4362713..4363156 (-) 444 WP_001189432.1 EutP/PduV family microcompartment system protein -
  I3S_RS22925 (I3S_22910) pduU 4363161..4363511 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=237693 I3S_RS22895 WP_000980611.1 4357460..4358887(-) (sbcB) [Escherichia coli O121 str. RM8352]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=237693 I3S_RS22895 WP_000980611.1 4357460..4358887(-) (sbcB) [Escherichia coli O121 str. RM8352]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585