Detailed information    

insolico Bioinformatically predicted

Overview

Name   eppA   Type   Machinery gene
Locus tag   CFE53_RS02725 Genome accession   NZ_CP022242
Coordinates   580791..581819 (-) Length   342 a.a.
NCBI ID   WP_148120367.1    Uniprot ID   A0A510BBM9
Organism   Methanofervidicoccus sp. A16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 575791..586819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFE53_RS02710 (CFE53_02695) alaS 575993..578695 (-) 2703 WP_148120365.1 alanine--tRNA ligase -
  CFE53_RS02715 (CFE53_02700) - 579096..580352 (-) 1257 WP_148120366.1 M20 family metallo-hydrolase -
  CFE53_RS02725 (CFE53_02710) eppA 580791..581819 (-) 1029 WP_148120367.1 A24 family peptidase C-terminal domain-containing protein Machinery gene
  CFE53_RS02730 (CFE53_02715) - 582482..583669 (-) 1188 WP_148120368.1 redox-regulated ATPase YchF -
  CFE53_RS02735 (CFE53_02720) - 583769..584482 (-) 714 WP_148120369.1 metal-dependent hydrolase -
  CFE53_RS02740 (CFE53_02725) sucC 584577..585662 (+) 1086 WP_148120370.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 39074.17 Da        Isoelectric Point: 9.0736

>NTDB_id=237690 CFE53_RS02725 WP_148120367.1 580791..581819(-) (eppA) [Methanofervidicoccus sp. A16]
MDILTVVYFINFILLLIASYTDIKTREIPHTVVILMLLINLPVGYYLFGLDAIISFFATLILCLILGIGMGGGDVKIFTT
LAPIFSYGGKILYVPIPILLLIGISAVIVAFFPLINILRKYWKSIIPSSLGLSVFYGFLTYLFYKYKVPYASLLLWMYVI
ASIFISRKIPWYREMINKLSYLTPLYLLGIYVIDRNYFTDNNLLISFVICVFEFILISIVIYALTGAEVSVKKPIPQLKE
GDILRDIIFIKDGRAKVEGAGLWRRFKIMVDMEMGKKGDYDKIILTDGDGLKKEDLELLQRLHREGKIPVDELTLITTYP
FVPFVLVGYLVVLILHYYFGVV

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=237690 CFE53_RS02725 WP_148120367.1 580791..581819(-) (eppA) [Methanofervidicoccus sp. A16]
ATGGACATCCTGACAGTAGTATATTTTATCAACTTCATTCTCCTTTTAATAGCCTCATATACTGATATTAAAACTAGGGA
GATACCTCATACTGTTGTTATCCTTATGTTGTTGATAAACCTACCAGTTGGCTATTACCTCTTTGGATTAGATGCCATTA
TTTCCTTTTTTGCCACGTTAATACTCTGCCTCATACTAGGTATAGGTATGGGAGGGGGAGATGTAAAGATATTTACCACT
TTGGCACCTATATTCTCCTATGGAGGTAAGATATTATACGTGCCGATACCTATACTCCTCTTGATAGGTATAAGTGCCGT
AATTGTAGCCTTCTTCCCTTTAATAAACATCCTTAGAAAGTACTGGAAGAGTATTATACCATCTTCCTTAGGTTTAAGTG
TATTTTATGGCTTTCTGACGTATCTATTTTATAAATATAAAGTACCCTACGCCTCCCTCCTCCTCTGGATGTATGTAATC
GCCTCTATATTTATCTCCAGGAAGATACCATGGTACAGAGAGATGATAAACAAATTAAGTTATTTAACCCCTCTCTACCT
CCTTGGTATCTATGTGATAGATAGAAATTACTTTACAGACAACAACCTCCTGATATCCTTTGTAATATGTGTATTTGAAT
TCATCCTTATATCTATAGTAATATACGCATTAACTGGTGCCGAGGTATCTGTAAAAAAACCTATACCTCAGTTGAAGGAG
GGAGATATACTGAGGGATATCATCTTCATAAAGGATGGGAGGGCTAAGGTGGAAGGGGCTGGATTGTGGAGGAGGTTTAA
GATAATGGTAGATATGGAGATGGGGAAAAAGGGGGACTACGATAAGATCATCTTAACAGATGGAGATGGGCTAAAGAAGG
AGGACCTAGAACTTCTACAGAGGTTGCACAGGGAAGGTAAGATACCTGTAGATGAATTAACTCTAATTACAACATATCCC
TTTGTGCCCTTTGTACTTGTAGGGTACCTGGTGGTGTTGATACTTCACTACTACTTTGGAGTAGTATAG

Domains

Predicted by InterproScan.

Archaeal Peptidase A24 C-terminal Domain (Arc_PepC)

(207-309)

Type IV leader peptidase family (Peptidase_A24)

(10-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510BBM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eppA Methanococcus maripaludis strain DSM 2067

56.119

97.953

0.55

Multiple sequence alignment