Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I3S_RS18810 Genome accession   NZ_CP028110
Coordinates   3554921..3555436 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O121 str. RM8352     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3549921..3560436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3S_RS18765 (I3S_18750) csrA 3550508..3550693 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  I3S_RS18795 (I3S_18780) yqaB 3552151..3552717 (+) 567 WP_000273301.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  I3S_RS18800 (I3S_18785) yqaA 3552714..3553142 (+) 429 WP_001287454.1 YqaA family protein -
  I3S_RS18805 (I3S_18790) gshA 3553215..3554771 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  I3S_RS18810 (I3S_18795) luxS 3554921..3555436 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  I3S_RS18815 (I3S_18800) emrB 3555500..3557038 (-) 1539 WP_001370184.1 multidrug efflux MFS transporter permease subunit EmrB -
  I3S_RS18820 (I3S_18805) emrA 3557055..3558227 (-) 1173 WP_001370257.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  I3S_RS18825 (I3S_18810) emrR 3558354..3558884 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  I3S_RS18830 (I3S_18815) ygaH 3558975..3559310 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  I3S_RS18835 (I3S_18820) ygaZ 3559300..3560037 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=237683 I3S_RS18810 WP_001130211.1 3554921..3555436(+) (luxS) [Escherichia coli O121 str. RM8352]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=237683 I3S_RS18810 WP_001130211.1 3554921..3555436(+) (luxS) [Escherichia coli O121 str. RM8352]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731