Detailed information NTG0237680

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I3S_RS18505
• Genome accession: NZ_CP028110
• Coordinates: 3497508..3498500 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O121 str. RM8352
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3492508..3503500

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3S_RS18475 (I3S_18460)	ispD	3492569..3493279 (+)	711	WP_000246142.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I3S_RS18480 (I3S_18465)	ispF	3493279..3493758 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I3S_RS18485 (I3S_18470)	truD	3493755..3494804 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
I3S_RS18490 (I3S_18475)	surE	3494785..3495546 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I3S_RS18495 (I3S_18480)	pcm	3495540..3496166 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I3S_RS18500 (I3S_18485)	nlpD	3496351..3497445 (+)	1095	WP_306307908.1	murein hydrolase activator NlpD	-
I3S_RS18505 (I3S_18490)	rpoS	3497508..3498500 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I3S_RS18510 (I3S_18495)	-	3498621..3499028 (-)	408	WP_001208060.1	MarR family transcriptional regulator	-
I3S_RS18515 (I3S_18500)	-	3499175..3499768 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
I3S_RS18520 (I3S_18505)	-	3499768..3501195 (+)	1428	WP_000863215.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
I3S_RS18525 (I3S_18510)	-	3501206..3501442 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
I3S_RS18530 (I3S_18515)	ygbN	3501452..3502816 (-)	1365	WP_000104444.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=237680 I3S_RS18505 WP_000081550.1 3497508..3498500(+) (rpoS) [Escherichia coli O121 str. RM8352]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=237680 I3S_RS18505 WP_000081550.1 3497508..3498500(+) (rpoS) [Escherichia coli O121 str. RM8352]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715