Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I3S_RS05215 Genome accession   NZ_CP028110
Coordinates   1061247..1061876 (+) Length   209 a.a.
NCBI ID   WP_000841914.1    Uniprot ID   -
Organism   Escherichia coli O121 str. RM8352     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056247..1066876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3S_RS05190 (I3S_05180) ycbZ 1056637..1058397 (-) 1761 WP_000156526.1 Lon protease family protein -
  I3S_RS05195 (I3S_05185) matP 1058583..1059035 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  I3S_RS05200 (I3S_05190) ompA 1059110..1060162 (-) 1053 WP_000750419.1 porin OmpA -
  I3S_RS05210 (I3S_05200) sulA 1060519..1061028 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I3S_RS05215 (I3S_05205) sxy/tfoX 1061247..1061876 (+) 630 WP_000841914.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I3S_RS05220 (I3S_05210) yccS 1061839..1064001 (-) 2163 WP_000875061.1 YccS family putative transporter -
  I3S_RS05225 (I3S_05215) yccF 1064011..1064457 (-) 447 WP_001261235.1 YccF domain-containing protein -
  I3S_RS05230 (I3S_05220) helD 1064580..1066634 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24130.97 Da        Isoelectric Point: 9.2180

>NTDB_id=237640 I3S_RS05215 WP_000841914.1 1061247..1061876(+) (sxy/tfoX) [Escherichia coli O121 str. RM8352]
MKSPSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=237640 I3S_RS05215 WP_000841914.1 1061247..1061876(+) (sxy/tfoX) [Escherichia coli O121 str. RM8352]
ATGAAAAGCCCCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995