Detailed information NTG0237601

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: C7I86_RS10425
• Genome accession: NZ_CP028094
• Coordinates: 2204998..2206212 (+)
• Length: 404 a.a.
• NCBI ID: WP_014407124.1
• Uniprot ID: -
• Organism: Synechocystis sp. IPPAS B-1465
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2199998..2211212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7I86_RS10415 (C7I86_10395)	-	2201988..2203391 (-)	1404	WP_010873186.1	efflux RND transporter periplasmic adaptor subunit	-
C7I86_RS10420 (C7I86_10400)	pilT	2203785..2204894 (+)	1110	WP_010873187.1	type IV pilus twitching motility protein PilT	Machinery gene
C7I86_RS10425 (C7I86_10405)	pilC	2204998..2206212 (+)	1215	WP_014407124.1	type II secretion system F family protein	Machinery gene
C7I86_RS10430 (C7I86_10410)	-	2206614..2207291 (+)	678	WP_010873190.1	ATP-dependent Clp protease proteolytic subunit	-
C7I86_RS10435 (C7I86_10415)	-	2207391..2207999 (+)	609	WP_010873191.1	ATP-dependent Clp protease proteolytic subunit	-
C7I86_RS10440 (C7I86_10420)	-	2208210..2209535 (-)	1326	WP_010873192.1	aminopeptidase P N-terminal domain-containing protein	-
C7I86_RS10445 (C7I86_10425)	-	2209618..2210598 (-)	981	WP_010873193.1	S-methyl-5'-thioadenosine phosphorylase	-
C7I86_RS10450 (C7I86_10430)	-	2210543..2210779 (-)	237	WP_010873194.1	DUF3134 domain-containing protein	-
C7I86_RS10455 (C7I86_10435)	-	2210846..2211001 (-)	156	WP_010873195.1	ribbon-helix-helix domain-containing protein	-

Sequence

Protein

• Length: 404 a.a.
• Molecular weight: 43793.74 Da
• Isoelectric Point: 5.2932

>NTDB_id=237601 C7I86_RS10425 WP_014407124.1 2204998..2206212(+) (pilC) [Synechocystis sp. IPPAS B-1465]
MATFVAQVKDRKGKTTKAKVEAMSPEQARTILRQQYAAIGPIKPAGGEINLEFLENLLNNVSVKDKAVFSRQFSVMINAG
VAIVRCLGVLSEQCPNPKLKRALTGISGEVQQGTNLSEAMGKYPECFDDLYVSMVEAGETGGVLDEVLNRLSKLLEDMAR
LQNQIKSAMAYPVAVGFLAVVAFLGMTIFLIPVFAGIFDDLGGELPALTKFMVGLSNFLRSPMAVIPVIVIVVAVFLFKK
YYGTYAGRRQVDAVMLKLPLFGPLNEKTAVARFCRVFGTLTRSGVPIIQSLEIVCNTVPNKVISDAIAGAISEIQQGGMM
SLALQQSKVFPSLAIQMISIGEETGELDAMMMKVADFYEDEVEQTVKALTSIIEPAMMVLIAGMVGTILLSMYLPMFAIF
DQLG

Nucleotide

• Length: 1215 bp

>NTDB_id=237601 C7I86_RS10425 WP_014407124.1 2204998..2206212(+) (pilC) [Synechocystis sp. IPPAS B-1465]
ATGGCTACGTTTGTCGCTCAAGTTAAAGATCGTAAAGGTAAAACCACCAAAGCCAAGGTGGAAGCCATGAGTCCAGAACA
GGCTCGTACCATCCTCCGCCAACAATACGCGGCGATCGGCCCCATTAAGCCAGCCGGAGGGGAAATAAACCTCGAATTCC
TGGAAAATTTACTTAACAACGTTAGTGTCAAGGACAAAGCGGTTTTCTCCCGACAGTTTTCCGTCATGATCAACGCTGGC
GTGGCGATCGTTCGTTGTTTGGGGGTGCTGTCGGAACAATGTCCTAATCCCAAACTGAAAAGGGCATTAACGGGTATTAG
TGGGGAAGTTCAACAGGGCACTAACCTTTCTGAAGCCATGGGCAAATATCCCGAATGTTTTGATGACCTCTACGTCAGCA
TGGTGGAAGCAGGGGAAACGGGGGGGGTTTTAGACGAAGTTCTCAACCGACTTTCCAAACTGCTGGAAGACATGGCCCGT
CTGCAAAACCAAATTAAATCCGCCATGGCTTATCCGGTGGCAGTAGGTTTCTTGGCGGTGGTGGCTTTTCTCGGTATGAC
CATCTTCCTCATCCCTGTCTTTGCGGGAATTTTTGATGACCTGGGGGGAGAACTGCCCGCTTTAACCAAATTTATGGTCG
GCCTAAGTAACTTTTTAAGAAGTCCAATGGCCGTCATCCCCGTAATTGTTATTGTGGTTGCCGTTTTTCTATTCAAAAAA
TATTACGGAACCTATGCTGGGCGGCGACAAGTCGATGCGGTGATGTTGAAACTACCTTTGTTTGGTCCCCTGAATGAAAA
AACCGCTGTAGCTAGGTTTTGCCGGGTATTTGGCACCCTTACCCGTTCGGGGGTTCCCATTATTCAGTCTTTGGAAATTG
TTTGTAATACTGTGCCCAATAAAGTGATTTCCGATGCGATCGCCGGGGCTATTAGTGAAATTCAACAGGGGGGCATGATG
AGTTTGGCTCTGCAACAAAGTAAGGTTTTCCCCTCTTTGGCGATTCAAATGATTAGTATTGGGGAAGAAACGGGGGAACT
GGATGCCATGATGATGAAAGTGGCGGACTTCTATGAAGACGAAGTAGAACAAACCGTCAAAGCGTTGACTAGTATTATAG
AACCAGCTATGATGGTGCTGATTGCCGGTATGGTCGGGACAATTTTGCTTTCCATGTATCTACCCATGTTTGCCATCTTT
GATCAGTTAGGTTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (69-192)

• Type II secretion system (T2SS), protein F (T2SSF) (273-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	40.64	100	0.408