Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   C7I86_RS03245 Genome accession   NZ_CP028094
Coordinates   690899..691264 (-) Length   121 a.a.
NCBI ID   WP_010871830.1    Uniprot ID   -
Organism   Synechocystis sp. IPPAS B-1465     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 685899..696264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7I86_RS03235 (C7I86_03225) - 687391..690252 (-) 2862 WP_010871828.1 HAMP domain-containing methyl-accepting chemotaxis protein -
  C7I86_RS03240 (C7I86_03230) - 690399..690866 (-) 468 WP_010871829.1 CheW domain-containing protein -
  C7I86_RS03245 (C7I86_03235) pilH 690899..691264 (-) 366 WP_010871830.1 PleD family two-component system response regulator Machinery gene
  C7I86_RS03250 (C7I86_03240) - 691371..692492 (-) 1122 WP_020861489.1 response regulator -
  C7I86_RS03255 (C7I86_03245) - 693211..695211 (-) 2001 WP_010871832.1 ribonuclease catalytic domain-containing protein -
  C7I86_RS03260 (C7I86_03250) - 695290..695874 (-) 585 WP_010871833.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13684.93 Da        Isoelectric Point: 4.4247

>NTDB_id=237579 C7I86_RS03245 WP_010871830.1 690899..691264(-) (pilH) [Synechocystis sp. IPPAS B-1465]
MKTVLVVEDTKSDQLLVQGLLKSMGTEAVICNNADEALEWLNKNTVPDLIMLDIVMPDISGYDLCRKIRGELALEDVPIV
FCSTKNEDYDRFWALRQGGNAYLIKPYSPIELMKTVKPYIS

Nucleotide


Download         Length: 366 bp        

>NTDB_id=237579 C7I86_RS03245 WP_010871830.1 690899..691264(-) (pilH) [Synechocystis sp. IPPAS B-1465]
GTGAAAACTGTTTTAGTTGTGGAAGATACCAAGTCTGACCAGTTATTGGTTCAGGGGCTTTTAAAGTCCATGGGCACAGA
GGCTGTCATTTGTAACAATGCCGATGAAGCCCTGGAATGGTTAAACAAAAATACGGTGCCTGACCTAATTATGCTGGACA
TCGTTATGCCGGATATTAGTGGTTATGACCTATGTCGCAAAATTCGGGGAGAATTGGCCCTAGAAGATGTGCCCATTGTC
TTCTGTTCCACCAAAAATGAGGATTACGACCGTTTTTGGGCCCTGCGCCAGGGGGGTAATGCTTATTTGATTAAGCCCTA
TAGCCCCATTGAGTTGATGAAAACCGTTAAGCCCTATATTTCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

46.154

96.694

0.446

Multiple sequence alignment