Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MYMAC_RS06320 Genome accession   NZ_CP022203
Coordinates   1504263..1505630 (-) Length   455 a.a.
NCBI ID   WP_013935589.1    Uniprot ID   -
Organism   Corallococcus macrosporus DSM 14697     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1499263..1510630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYMAC_RS06310 (MYMAC_001255) - 1500966..1501517 (+) 552 WP_095957421.1 dihydrofolate reductase family protein -
  MYMAC_RS06315 (MYMAC_001256) - 1501582..1503756 (-) 2175 WP_170114705.1 glycosyl hydrolase family 18 protein -
  MYMAC_RS06320 (MYMAC_001257) radA 1504263..1505630 (-) 1368 WP_013935589.1 DNA repair protein RadA Machinery gene
  MYMAC_RS06325 (MYMAC_001258) - 1505814..1506083 (+) 270 WP_013935588.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  MYMAC_RS06330 (MYMAC_001259) bioB 1506226..1507260 (+) 1035 WP_095957423.1 biotin synthase BioB -
  MYMAC_RS06335 (MYMAC_001260) bioF 1507267..1508448 (+) 1182 WP_095957424.1 8-amino-7-oxononanoate synthase -
  MYMAC_RS06340 (MYMAC_001261) bioD 1508435..1509118 (+) 684 WP_095957425.1 dethiobiotin synthase -
  MYMAC_RS06345 (MYMAC_001262) - 1509251..1509529 (+) 279 WP_013935584.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48312.79 Da        Isoelectric Point: 7.6451

>NTDB_id=237513 MYMAC_RS06320 WP_013935589.1 1504263..1505630(-) (radA) [Corallococcus macrosporus DSM 14697]
MAKAKTHYTCQACGYKTAKWLGKCPDCGAWSSLLEETDPKADERRPAWGASGGAARPMLLKEVSGETETRRRTGIAEFDR
VLGGGVVSGSIVLLGGDPGIGKSTLLLAALDRLARHGPVLYVSGEESLRQTKMRAERLKVEGDSIHLFAETDAERVLTAT
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVPDPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLTEPACDLAVCAALVSSLQNRPLDPKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRLEDAGPKMKIVGVETLGDALVAMFD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=237513 MYMAC_RS06320 WP_013935589.1 1504263..1505630(-) (radA) [Corallococcus macrosporus DSM 14697]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCGTGTGGGTACAAAACGGCGAAGTGGCTGGGGAAGTGCCCGGACTG
TGGCGCGTGGAGTTCCCTGCTGGAGGAGACGGACCCGAAGGCGGATGAACGGCGCCCGGCCTGGGGCGCCTCGGGTGGCG
CGGCGCGGCCCATGCTGCTCAAGGAGGTGAGCGGCGAGACGGAGACGCGCCGGCGCACGGGCATCGCCGAGTTCGACCGC
GTGCTGGGCGGCGGCGTGGTGAGCGGCTCCATCGTGCTGCTGGGTGGTGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
GGCGGCGCTGGACCGGCTGGCGCGCCACGGACCGGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCCGAGCGGCTGAAGGTGGAGGGTGACTCCATCCACCTGTTCGCGGAGACGGACGCGGAGCGGGTGCTGACGGCGACG
GAGGCCCTGAAGCCGCAGGCGCTGGTGGTGGACTCGATCCAGACGATGTACCTGCCGGAGCTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCCTATGCGAAGCGCACGGGCGTCCCCACGTTCCTGGTGGGCC
ACGTCACGAAGGAAGGCTCCATCGCGGGTCCGCGCGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCGTTCCGGATTCTCCGCGCGCACAAGAACCGCTTCGGCTCCACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTCGTGGAGGTGCCGGACCCGTCCGCGCTGTTCCTGTCGGAGCGGCCGGTGGGCAAGTCCGGCAGCGTCG
TCACGAGCACGCTGAACGGCACGCGCCCGCTGCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTACGGCACCGCG
CGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGAGATTCCGCT
GGTGGGCTGCGACCTGTTCGTCAACGTGGCGGGCGGCATGCAGCTCACGGAACCGGCGTGTGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTCCAGAACCGGCCGTTGGATCCGAAGACGCTGGTGCTGGGTGAAGTGGGCCTCGCCGGAGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGCGCCTGGCGGAGGCCGCGAAGATGGGCTTCCAGCGCGTGGTGATGCCCGCGGGCAG
CGCGCGGCGGCTGGAGGACGCGGGGCCGAAGATGAAGATCGTCGGCGTGGAGACGCTCGGCGATGCGCTGGTCGCGATGT
TCGATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(81-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.407

100

0.534
  radA Streptococcus mitis SK321

51.974

100

0.521
  radA Streptococcus mitis NCTC 12261

51.868

100

0.519
  radA Streptococcus pneumoniae TIGR4

51.648

100

0.516
  radA Streptococcus pneumoniae Rx1

51.648

100

0.516
  radA Streptococcus pneumoniae D39

51.648

100

0.516
  radA Streptococcus pneumoniae R6

51.648

100

0.516

Multiple sequence alignment