Detailed information NTG0237490

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MPAO1_RS06820
• Genome accession: NZ_CP027857
• Coordinates: 1456435..1457439 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain MPAO1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1451435..1462439

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPAO1_RS06790 (MPAO1_06930)	fghA	1451527..1452378 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
MPAO1_RS06795 (MPAO1_06935)	ispF	1452449..1452922 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MPAO1_RS06800 (MPAO1_06940)	truD	1452919..1453986 (+)	1068	WP_003113870.1	tRNA pseudouridine(13) synthase TruD	-
MPAO1_RS06805 (MPAO1_06945)	surE	1453974..1454723 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
MPAO1_RS06810 (MPAO1_06950)	-	1454756..1455391 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
MPAO1_RS06815 (MPAO1_06955)	-	1455437..1456330 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
MPAO1_RS06820 (MPAO1_06960)	rpoS	1456435..1457439 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
MPAO1_RS06825 (MPAO1_06965)	fdxA	1457866..1458189 (-)	324	WP_003092272.1	ferredoxin FdxA	-
MPAO1_RS06830 (MPAO1_06970)	mutS	1458256..1460823 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
MPAO1_RS06835 (MPAO1_06980)	-	1460949..1461956 (-)	1008	WP_003113874.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=237490 MPAO1_RS06820 WP_003113871.1 1456435..1457439(+) (rpoS) [Pseudomonas aeruginosa strain MPAO1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=237490 MPAO1_RS06820 WP_003113871.1 1456435..1457439(+) (rpoS) [Pseudomonas aeruginosa strain MPAO1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653