Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   C7M53_RS12500 Genome accession   NZ_CP027789
Coordinates   2378617..2379099 (-) Length   160 a.a.
NCBI ID   WP_009328420.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TAB7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2373617..2384099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M53_RS12465 (C7M53_12455) - 2373751..2374137 (+) 387 WP_021837858.1 hypothetical protein -
  C7M53_RS12470 (C7M53_12460) - 2374156..2374410 (+) 255 WP_009328416.1 phage holin -
  C7M53_RS12475 (C7M53_12465) - 2374429..2374728 (+) 300 WP_034291560.1 hypothetical protein -
  C7M53_RS23890 (C7M53_12470) - 2374965..2375015 (+) 51 WP_228767678.1 hypothetical protein -
  C7M53_RS24110 - 2375450..2375578 (-) 129 WP_021837855.1 hypothetical protein -
  C7M53_RS12485 (C7M53_12475) - 2375575..2376681 (-) 1107 WP_119953848.1 tetratricopeptide repeat protein -
  C7M53_RS12490 (C7M53_12480) - 2376793..2378052 (-) 1260 WP_119953850.1 MFS transporter -
  C7M53_RS12495 (C7M53_12485) - 2378194..2378547 (-) 354 WP_009328419.1 hypothetical protein -
  C7M53_RS12500 (C7M53_12490) rok 2378617..2379099 (-) 483 WP_009328420.1 hypothetical protein Regulator
  C7M53_RS12510 (C7M53_12500) - 2379385..2379843 (-) 459 WP_119953852.1 SMI1/KNR4 family protein -
  C7M53_RS12515 (C7M53_12505) - 2379884..2380306 (-) 423 WP_075646818.1 SMI1/KNR4 family protein -
  C7M53_RS12520 (C7M53_12510) - 2380321..2380608 (-) 288 WP_119953854.1 HNH/ENDO VII family nuclease -
  C7M53_RS12525 (C7M53_12515) - 2380712..2381191 (-) 480 WP_075646820.1 antitoxin YezG family protein -
  C7M53_RS12530 (C7M53_12520) - 2381195..2383243 (-) 2049 WP_119953855.1 T7SS effector LXG polymorphic toxin -
  C7M53_RS12535 (C7M53_12525) - 2383402..2383962 (-) 561 WP_237711641.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18464.27 Da        Isoelectric Point: 10.5742

>NTDB_id=237403 C7M53_RS12500 WP_009328420.1 2378617..2379099(-) (rok) [Bacillus licheniformis strain TAB7]
MFNEREALRLRLEQLNDKEIIVMRELREEREGIYSKLRELDKNQSNPPQVRESSSLMDLVSAAAQELKQSKSSSPRIQTN
NASQPFNKSITSIQREAALKILSMHKEGIRGAGLRKEIEKETGMKVKNMTTFMSGLMKHHPEIKKPGRGHYVIKREKSFE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=237403 C7M53_RS12500 WP_009328420.1 2378617..2379099(-) (rok) [Bacillus licheniformis strain TAB7]
ATGTTTAATGAACGAGAAGCGTTACGTTTGAGGCTTGAGCAGCTAAACGATAAAGAAATTATTGTCATGAGAGAGCTCAG
AGAAGAACGAGAAGGTATTTATTCAAAGTTGCGCGAGTTGGACAAAAACCAGAGTAATCCTCCTCAAGTCAGAGAAAGCT
CTTCATTGATGGATTTAGTTAGCGCAGCAGCCCAAGAATTGAAACAGTCTAAAAGCTCATCTCCACGCATTCAGACAAAC
AATGCCTCGCAACCCTTTAATAAGTCTATAACATCTATACAGCGTGAAGCAGCACTTAAAATATTGAGTATGCATAAAGA
AGGCATTAGAGGGGCAGGGCTTCGTAAGGAAATTGAGAAAGAAACAGGCATGAAAGTTAAAAATATGACAACTTTTATGA
GCGGACTCATGAAACACCATCCTGAAATCAAAAAACCAGGCCGCGGTCATTATGTTATTAAGCGTGAAAAGTCCTTTGAG
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

42.623

100

0.488

Multiple sequence alignment