Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CES94_RS10020 Genome accession   NZ_CP022154
Coordinates   1929707..1930336 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ABWA45     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1924707..1935336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CES94_RS09995 (CES94_09995) ycbZ 1925097..1926857 (-) 1761 WP_000156516.1 Lon protease family protein -
  CES94_RS10000 (CES94_10000) matP 1927043..1927495 (+) 453 WP_088765700.1 macrodomain Ter protein MatP -
  CES94_RS10005 (CES94_10005) ompA 1927570..1928622 (-) 1053 WP_001307702.1 porin OmpA -
  CES94_RS10015 (CES94_10015) sulA 1928979..1929488 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CES94_RS10020 (CES94_10020) sxy/tfoX 1929707..1930336 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CES94_RS10025 (CES94_10025) yccS 1930299..1932461 (-) 2163 WP_000875023.1 YccS family putative transporter -
  CES94_RS10030 (CES94_10030) yccF 1932471..1932917 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CES94_RS10035 (CES94_10035) helD 1933040..1935094 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=237304 CES94_RS10020 WP_000839153.1 1929707..1930336(+) (sxy/tfoX) [Escherichia coli strain ABWA45]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=237304 CES94_RS10020 WP_000839153.1 1929707..1930336(+) (sxy/tfoX) [Escherichia coli strain ABWA45]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment