Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ53_RS16545 Genome accession   NZ_CP022142
Coordinates   3310748..3311353 (-) Length   201 a.a.
NCBI ID   WP_053530142.1    Uniprot ID   -
Organism   Salmonella enterica subsp. diarizonae serovar 50:k:z str. MZ0080     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3305748..3316353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ53_RS16530 (LFZ53_16525) helD 3305965..3308019 (-) 2055 WP_088760080.1 DNA helicase IV -
  LFZ53_RS16535 (LFZ53_16530) - 3308143..3308589 (+) 447 WP_001261216.1 YccF domain-containing protein -
  LFZ53_RS16540 (LFZ53_16535) yccS 3308608..3310761 (+) 2154 WP_023247033.1 YccS family putative transporter -
  LFZ53_RS16545 (LFZ53_16540) sxy/tfoX 3310748..3311353 (-) 606 WP_053530142.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ53_RS16550 (LFZ53_16545) sulA 3311570..3312079 (+) 510 WP_023247035.1 SOS-induced cell division inhibitor SulA -
  LFZ53_RS16555 (LFZ53_16550) ompA 3312436..3313488 (+) 1053 WP_053530176.1 porin OmpA -
  LFZ53_RS16560 (LFZ53_16555) matP 3313560..3314012 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ53_RS16565 (LFZ53_16560) - 3314198..3315958 (+) 1761 WP_053509640.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23129.84 Da        Isoelectric Point: 9.0103

>NTDB_id=237242 LFZ53_RS16545 WP_053530142.1 3310748..3311353(-) (sxy/tfoX) [Salmonella enterica subsp. diarizonae serovar 50:k:z str. MZ0080]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRVLGAKMCWLRLRQSN
PLLTVKVLYALEGAIAGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=237242 LFZ53_RS16545 WP_053530142.1 3310748..3311353(-) (sxy/tfoX) [Salmonella enterica subsp. diarizonae serovar 50:k:z str. MZ0080]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCCTT
ATTCGGCAGCTATAGTCTGACCGTGGAAGATACCGTCTTTGCGATGGTGGCTAACGGCGAGCTTTATCTCCGCGCCTGTG
AGCAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACATTTATGAAGTGTGGACGCCCTGTTATGCTCAAC
TATTATCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAATATGTTACGCGTACTGGGTGCAAAAATGTGCTGGCTAAGGTTGCGACAAAGTAAT
CCTTTGCTGACGGTAAAAGTTCTGTATGCGTTAGAAGGCGCAATTGCTGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGATTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.884

99.005

0.761

Multiple sequence alignment