Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   C7K40_RS04835 Genome accession   NZ_CP027771
Coordinates   935360..936430 (-) Length   356 a.a.
NCBI ID   WP_027968836.1    Uniprot ID   Q5XC26
Organism   Streptococcus pyogenes strain DMG1800716     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930360..941430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K40_RS04815 (C7K40_04815) citX 930991..931569 (+) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -
  C7K40_RS04820 (C7K40_04820) - 931584..932927 (+) 1344 WP_168388682.1 oxaloacetate decarboxylase subunit alpha -
  C7K40_RS04825 (C7K40_04825) citC 933037..934089 (-) 1053 WP_047235804.1 [citrate (pro-3S)-lyase] ligase -
  C7K40_RS04830 (C7K40_04830) - 934178..934660 (-) 483 WP_047235803.1 PASTA domain-containing protein -
  C7K40_RS04835 (C7K40_04835) xerS 935360..936430 (-) 1071 WP_027968836.1 tyrosine recombinase XerS Machinery gene
  C7K40_RS04840 (C7K40_04840) - 936905..937603 (+) 699 WP_002993300.1 S24 family peptidase -
  C7K40_RS04845 (C7K40_04845) ffh 937738..939300 (-) 1563 WP_063629509.1 signal recognition particle protein -
  C7K40_RS04850 (C7K40_04850) - 939315..939647 (-) 333 WP_002989745.1 putative DNA-binding protein -
  C7K40_RS04855 (C7K40_04855) - 939745..940443 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41487.57 Da        Isoelectric Point: 9.5552

>NTDB_id=237188 C7K40_RS04835 WP_027968836.1 935360..936430(-) (xerS) [Streptococcus pyogenes strain DMG1800716]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=237188 C7K40_RS04835 WP_027968836.1 935360..936430(-) (xerS) [Streptococcus pyogenes strain DMG1800716]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGTCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTATAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTTCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5XC26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803

Multiple sequence alignment