Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C7M85_RS28575 Genome accession   NZ_CP027766
Coordinates   5316322..5316837 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-3342     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5311322..5321837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M85_RS28530 csrA 5312041..5312226 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C7M85_RS28560 yqaB 5313552..5314118 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C7M85_RS28565 yqaA 5314115..5314543 (+) 429 WP_001287457.1 YqaA family protein -
  C7M85_RS28570 gshA 5314616..5316172 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C7M85_RS28575 luxS 5316322..5316837 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  C7M85_RS28580 emrB 5316901..5318439 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C7M85_RS28585 emrA 5318456..5319628 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C7M85_RS28590 emrR 5319755..5320285 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C7M85_RS28595 ygaH 5320376..5320711 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C7M85_RS28600 ygaZ 5320701..5321438 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=237137 C7M85_RS28575 WP_001130207.1 5316322..5316837(+) (luxS) [Escherichia coli strain 2013C-3342]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=237137 C7M85_RS28575 WP_001130207.1 5316322..5316837(+) (luxS) [Escherichia coli strain 2013C-3342]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731