Detailed information NTG0237134

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C7M85_RS28270
• Genome accession: NZ_CP027766
• Coordinates: 5258834..5259826 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2013C-3342
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5253834..5264826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7M85_RS28240	ispD	5253943..5254653 (+)	711	WP_044805698.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C7M85_RS28245	ispF	5254653..5255132 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C7M85_RS28250	truD	5255129..5256178 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
C7M85_RS28255	surE	5256159..5256920 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C7M85_RS28260	pcm	5256914..5257540 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C7M85_RS28265	nlpD	5257725..5258771 (+)	1047	WP_306308696.1	murein hydrolase activator NlpD	-
C7M85_RS28270	rpoS	5258834..5259826 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C7M85_RS28275	-	5259947..5260354 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
C7M85_RS28280	-	5260501..5261094 (+)	594	WP_106910337.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C7M85_RS28285	-	5261094..5262521 (+)	1428	WP_106884239.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C7M85_RS28290	-	5262532..5262768 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C7M85_RS28295	ygbN	5262807..5264171 (-)	1365	WP_044805700.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=237134 C7M85_RS28270 WP_000081550.1 5258834..5259826(+) (rpoS) [Escherichia coli strain 2013C-3342]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=237134 C7M85_RS28270 WP_000081550.1 5258834..5259826(+) (rpoS) [Escherichia coli strain 2013C-3342]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715