Detailed information NTG0237038

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CYU58_RS19580
• Genome accession: NZ_CP027701
• Coordinates: 3816172..3817164 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 675SK2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3811172..3822164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CYU58_RS19555 (CYU58_19530)	ygbN	3811827..3813191 (+)	1365	WP_000104455.1	GntP family transporter	-
CYU58_RS19560 (CYU58_19535)	-	3813230..3813466 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CYU58_RS19565 (CYU58_19540)	-	3813477..3814904 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CYU58_RS19570 (CYU58_19545)	-	3814904..3815497 (-)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CYU58_RS19575 (CYU58_19550)	-	3815644..3816051 (+)	408	WP_001521151.1	MarR family transcriptional regulator	-
CYU58_RS19580 (CYU58_19555)	rpoS	3816172..3817164 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CYU58_RS19585 (CYU58_19560)	nlpD	3817227..3818321 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CYU58_RS19590 (CYU58_19565)	pcm	3818506..3819132 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CYU58_RS19595 (CYU58_19570)	surE	3819126..3819887 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CYU58_RS19600 (CYU58_19575)	truD	3819868..3820917 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
CYU58_RS19605 (CYU58_19580)	ispF	3820914..3821393 (-)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CYU58_RS19610 (CYU58_19585)	ispD	3821393..3822103 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=237038 CYU58_RS19580 WP_000081550.1 3816172..3817164(-) (rpoS) [Escherichia coli strain 675SK2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=237038 CYU58_RS19580 WP_000081550.1 3816172..3817164(-) (rpoS) [Escherichia coli strain 675SK2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715