Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CYU58_RS19275 Genome accession   NZ_CP027701
Coordinates   3759890..3760405 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 675SK2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3754890..3765405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYU58_RS19250 (CYU58_19225) ygaZ 3755289..3756026 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CYU58_RS19255 (CYU58_19230) ygaH 3756016..3756351 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CYU58_RS19260 (CYU58_19235) emrR 3756442..3756972 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CYU58_RS19265 (CYU58_19240) emrA 3757099..3758271 (+) 1173 WP_020233875.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CYU58_RS19270 (CYU58_19245) emrB 3758288..3759826 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CYU58_RS19275 (CYU58_19250) luxS 3759890..3760405 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CYU58_RS19280 (CYU58_19255) gshA 3760555..3762111 (-) 1557 WP_001521120.1 glutamate--cysteine ligase -
  CYU58_RS19285 (CYU58_19260) yqaA 3762184..3762612 (-) 429 WP_001287454.1 YqaA family protein -
  CYU58_RS19290 (CYU58_19265) yqaB 3762609..3763175 (-) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CYU58_RS19320 (CYU58_19295) csrA 3764467..3764652 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=237035 CYU58_RS19275 WP_001130211.1 3759890..3760405(-) (luxS) [Escherichia coli strain 675SK2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=237035 CYU58_RS19275 WP_001130211.1 3759890..3760405(-) (luxS) [Escherichia coli strain 675SK2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731