Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ25_RS15530 Genome accession   NZ_CP022117
Coordinates   2955164..2955769 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2950164..2960769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ25_RS15515 (LFZ25_15515) helD 2950381..2952435 (-) 2055 WP_088730788.1 DNA helicase IV -
  LFZ25_RS15520 (LFZ25_15520) - 2952559..2953005 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ25_RS15525 (LFZ25_15525) yccS 2953024..2955177 (+) 2154 WP_088730789.1 YccS family putative transporter -
  LFZ25_RS15530 (LFZ25_15530) sxy/tfoX 2955164..2955769 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ25_RS15535 (LFZ25_15535) sulA 2955986..2956495 (+) 510 WP_080243981.1 SOS-induced cell division inhibitor SulA -
  LFZ25_RS15540 (LFZ25_15540) ompA 2956852..2957904 (+) 1053 WP_080243982.1 porin OmpA -
  LFZ25_RS15545 (LFZ25_15545) matP 2957976..2958428 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ25_RS15550 (LFZ25_15550) - 2958614..2960374 (+) 1761 WP_088730790.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=236980 LFZ25_RS15530 WP_001202375.1 2955164..2955769(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=236980 LFZ25_RS15530 WP_001202375.1 2955164..2955769(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGCCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment