Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ36_RS14945 Genome accession   NZ_CP022116
Coordinates   2891707..2892312 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Ouakam str. SA20034636     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2886707..2897312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ36_RS14930 (LFZ36_14920) helD 2886924..2888978 (-) 2055 WP_023228225.1 DNA helicase IV -
  LFZ36_RS14935 (LFZ36_14925) - 2889102..2889548 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LFZ36_RS14940 (LFZ36_14930) yccS 2889567..2891720 (+) 2154 WP_000950876.1 YccS family putative transporter -
  LFZ36_RS14945 (LFZ36_14935) sxy/tfoX 2891707..2892312 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ36_RS14950 (LFZ36_14940) sulA 2892529..2893038 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LFZ36_RS14955 (LFZ36_14945) ompA 2893395..2894447 (+) 1053 WP_023259507.1 porin OmpA -
  LFZ36_RS14960 (LFZ36_14950) matP 2894519..2894971 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LFZ36_RS14965 (LFZ36_14955) - 2895157..2896917 (+) 1761 WP_000156448.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=236956 LFZ36_RS14945 WP_001202375.1 2891707..2892312(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Ouakam str. SA20034636]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=236956 LFZ36_RS14945 WP_001202375.1 2891707..2892312(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Ouakam str. SA20034636]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment