Detailed information NTG0236955

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C7A17_RS19585
• Genome accession: NZ_CP027657
• Coordinates: 4207845..4208852 (+)
• Length: 335 a.a.
• NCBI ID: WP_106739591.1
• Uniprot ID: A0A7G5DTS6
• Organism: Ectopseudomonas mendocina strain NEB698
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4202845..4213852

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7A17_RS19555 (C7A17_19555)	ispF	4202936..4203409 (+)	474	WP_106739586.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C7A17_RS19560 (C7A17_19560)	truD	4203406..4204464 (+)	1059	WP_106739587.1	tRNA pseudouridine(13) synthase TruD	-
C7A17_RS19565 (C7A17_19565)	surE	4204452..4205201 (+)	750	WP_106739588.1	5'/3'-nucleotidase SurE	-
C7A17_RS19570 (C7A17_19570)	-	4205201..4205875 (+)	675	WP_106739589.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C7A17_RS19575 (C7A17_19575)	-	4205892..4206833 (+)	942	WP_106739590.1	DUF368 domain-containing protein	-
C7A17_RS19580 (C7A17_19580)	-	4206936..4207745 (+)	810	WP_106743049.1	peptidoglycan DD-metalloendopeptidase family protein	-
C7A17_RS19585 (C7A17_19585)	rpoS	4207845..4208852 (+)	1008	WP_106739591.1	RNA polymerase sigma factor RpoS	Regulator
C7A17_RS19590 (C7A17_19590)	fdxA	4209332..4209655 (-)	324	WP_106739592.1	ferredoxin FdxA	-
C7A17_RS19595 (C7A17_19595)	mutS	4209796..4212363 (-)	2568	WP_106739593.1	DNA mismatch repair protein MutS	-
C7A17_RS19600 (C7A17_19600)	-	4212456..4213760 (-)	1305	WP_106739594.1	PAS domain-containing methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38317.63 Da
• Isoelectric Point: 4.9689

>NTDB_id=236955 C7A17_RS19585 WP_106739591.1 4207845..4208852(+) (rpoS) [Ectopseudomonas mendocina strain NEB698]
MALIKKEAPEFDVDDELLLMEPGIVLGEDQSDEVETPVARTKAKHATPSKQHKYIDYTRALDATQLYLNEIGFSPLLTPE
EEVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTI
ERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSAEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTL
LDTLTDDRPTDPCELLQDDDLSQSIDQWLSDLTDKQREVVVRRFGLRGHESCTLEEVGQEIGLTRERVRQIQVEALKRLR
EILEKNGLSSDALFQ

Nucleotide

• Length: 1008 bp

>NTDB_id=236955 C7A17_RS19585 WP_106739591.1 4207845..4208852(+) (rpoS) [Ectopseudomonas mendocina strain NEB698]
ATGGCTCTCATCAAAAAAGAAGCGCCGGAGTTTGACGTCGACGATGAGCTGCTCCTCATGGAGCCAGGCATCGTTTTGGG
CGAGGATCAGAGTGATGAGGTGGAAACGCCCGTCGCGCGTACCAAGGCCAAGCACGCCACCCCCTCCAAGCAACACAAGT
ACATCGACTACACCCGGGCGCTAGACGCCACTCAGCTGTACCTCAACGAAATCGGCTTTTCTCCCCTGCTTACTCCCGAA
GAGGAAGTGCACTTCGCGCGTCTGGCGCAGAAGGGTGACCCTGCCGGGCGCAAGCGCATGATCGAAAGCAACCTGCGCCT
GGTGGTGAAGATTGCTCGGCGCTACGTCAATCGCGGTCTTTCTCTGCTCGATCTGATCGAGGAGGGCAACCTGGGCTTGA
TTCGCGCCGTGGAAAAATTCGATCCGGAGCGGGGGTTCCGGTTTTCGACTTATGCAACCTGGTGGATTCGCCAGACCATC
GAACGCGCCATCATGAACCAGACGCGCACCATTCGTCTGCCAATTCATGTGGTCAAAGAGTTGAACGTATACCTGCGTGC
AGCTCGCGAACTGACCCAGAAGCTCGATCATGAGCCTTCTGCGGAAGAGATTGCCAACCTGCTGGAAAAACCGGTAGGCG
AGGTCAAGCGCATGCTCGGTCTCAATGAGCGAGTGTCCTCGGTGGATGTCTCTCTCGGTCCGGACTCGGACAAGACGTTG
CTCGATACGCTGACCGATGACCGGCCGACCGACCCCTGTGAGTTGTTGCAGGATGACGACCTGTCACAGAGCATCGATCA
GTGGTTGTCGGATCTGACCGACAAGCAGCGCGAAGTCGTCGTGCGCCGCTTTGGTTTGCGCGGTCATGAGAGCTGCACCT
TGGAAGAAGTGGGCCAGGAGATTGGCTTGACGCGTGAGCGGGTGCGGCAGATTCAGGTCGAAGCACTCAAGCGTCTGCGT
GAGATTCTCGAGAAGAATGGTCTCTCCAGTGATGCGCTCTTTCAGTAG

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (180-254)

• Sigma-70, region 4 (Sigma70_r4) (268-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (62-95)

3D structure

• AlphaFold DB: A0A7G5DTS6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	65.749	97.612	0.642