Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   C7A17_RS10130 Genome accession   NZ_CP027657
Coordinates   2178737..2179777 (-) Length   346 a.a.
NCBI ID   WP_106737910.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NEB698     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2173737..2184777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS10110 (C7A17_10110) hemF 2174634..2175548 (-) 915 WP_106742851.1 oxygen-dependent coproporphyrinogen oxidase -
  C7A17_RS10115 (C7A17_10115) - 2175696..2176673 (+) 978 WP_106737908.1 NADPH:quinone reductase -
  C7A17_RS10120 (C7A17_10120) - 2176885..2177442 (-) 558 WP_106737909.1 L-threonylcarbamoyladenylate synthase -
  C7A17_RS10125 (C7A17_10125) dprA 2177552..2178655 (-) 1104 WP_106742854.1 DNA-processing protein DprA Machinery gene
  C7A17_RS10130 (C7A17_10130) tsaP 2178737..2179777 (-) 1041 WP_106737910.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  C7A17_RS10135 (C7A17_10135) def 2179930..2180436 (+) 507 WP_106737911.1 peptide deformylase -
  C7A17_RS10140 (C7A17_10140) fmt 2180489..2181433 (+) 945 WP_106737912.1 methionyl-tRNA formyltransferase -
  C7A17_RS10145 (C7A17_10145) rsmB 2181430..2182728 (+) 1299 WP_106737913.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  C7A17_RS10150 (C7A17_10150) trkA 2182880..2184253 (+) 1374 WP_106737914.1 Trk system potassium transporter TrkA -
  C7A17_RS10155 (C7A17_10155) - 2184332..2184646 (+) 315 WP_106737915.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38017.27 Da        Isoelectric Point: 5.2816

>NTDB_id=236922 C7A17_RS10130 WP_106737910.1 2178737..2179777(-) (tsaP) [Ectopseudomonas mendocina strain NEB698]
MRKSLLALLLVAAGGLAQTGMALAEVQLKDGHPDRYTVVKGDTLWDISGKFLRQPWKWPEIWHANPQVSNPHLIYPGDTL
NLVYIDGQPRLMLNRGESRGTIKLSPQVRSTPMAEAIPTIPLEAINSFLLSNRIVDTPEDFSGKPYVVAGNAERVVSGAG
DRVYARGQFDEQHPVYGIFRQGKTYTDPDTKEFLGINADDIGTGEIVAEEGDIGTLVLSRSTQEVRLGDRLFPTEERAIN
STFMPSEPASEINGLILDVPRGVTQIGQFDVVTLNKGARDGLEIGNVLAVYKTGETVRDRVTGESVKIPDERSGLLMVFR
TYDKLSYGLVLGATRQLAVMDKVRNP

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=236922 C7A17_RS10130 WP_106737910.1 2178737..2179777(-) (tsaP) [Ectopseudomonas mendocina strain NEB698]
ATGAGGAAATCACTACTCGCCCTGCTGCTCGTTGCAGCCGGCGGATTGGCCCAGACCGGAATGGCCCTGGCCGAAGTGCA
GCTCAAGGACGGTCATCCGGACCGTTACACCGTGGTCAAGGGCGATACCCTCTGGGACATCTCCGGAAAATTCCTGCGCC
AACCGTGGAAGTGGCCGGAAATCTGGCATGCCAACCCGCAGGTTTCCAATCCGCACCTGATCTATCCCGGTGACACCCTA
AACCTCGTCTACATCGATGGTCAGCCGCGCCTGATGCTCAACCGTGGCGAGTCGCGCGGCACCATCAAGCTGTCACCACA
GGTGCGCAGCACGCCGATGGCCGAGGCGATACCGACCATTCCGCTGGAGGCTATCAACAGTTTCCTGCTGAGCAACCGCA
TCGTCGACACCCCGGAAGACTTCAGTGGTAAGCCCTACGTCGTCGCCGGTAACGCTGAGCGCGTGGTCAGCGGTGCAGGG
GATCGTGTCTATGCTCGTGGCCAGTTCGATGAGCAGCACCCGGTCTACGGCATCTTCCGTCAGGGCAAGACCTACACGGA
TCCGGATACCAAGGAATTCCTCGGTATCAATGCCGATGACATCGGTACCGGTGAAATCGTCGCTGAAGAAGGTGACATCG
GTACGCTGGTGTTGAGTCGCTCGACCCAGGAAGTGCGTCTTGGCGACCGCTTGTTCCCCACCGAGGAGCGCGCGATCAAC
TCCACCTTCATGCCCAGCGAGCCGGCCAGTGAGATCAATGGTCTGATTCTCGATGTGCCGCGTGGTGTGACCCAGATCGG
TCAGTTCGACGTAGTCACCCTGAACAAGGGCGCGCGCGATGGTCTGGAGATCGGCAACGTGCTGGCGGTGTACAAAACGG
GTGAGACCGTACGTGATCGCGTCACGGGTGAAAGCGTAAAAATTCCGGATGAGCGTTCTGGTCTGCTGATGGTGTTCCGC
ACCTACGACAAGCTCAGCTATGGCCTGGTACTTGGCGCTACACGCCAACTGGCCGTGATGGACAAGGTTCGCAATCCGTA
A

Domains

Predicted by InterProScan.

LysM domain (LysM)

(36-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

37.432

100

0.396