Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C7A17_RS03810 Genome accession   NZ_CP027657
Coordinates   806833..808278 (-) Length   481 a.a.
NCBI ID   WP_106736766.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NEB698     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 801833..813278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS03785 (C7A17_03785) - 802332..804209 (+) 1878 WP_106736761.1 methyl-accepting chemotaxis protein -
  C7A17_RS03790 (C7A17_03790) - 804300..804482 (-) 183 WP_106736762.1 hypothetical protein -
  C7A17_RS03795 (C7A17_03795) - 804498..804926 (-) 429 WP_106736763.1 CBS domain-containing protein -
  C7A17_RS03800 (C7A17_03800) purU 805035..805886 (-) 852 WP_106736764.1 formyltetrahydrofolate deformylase -
  C7A17_RS03805 (C7A17_03805) mvaT 806190..806564 (+) 375 WP_106736765.1 histone-like nucleoid-structuring protein MvaT -
  C7A17_RS03810 (C7A17_03810) sbcB 806833..808278 (-) 1446 WP_106736766.1 exodeoxyribonuclease I Machinery gene
  C7A17_RS03815 (C7A17_03815) - 808459..809217 (+) 759 WP_106736767.1 hypothetical protein -
  C7A17_RS03820 (C7A17_03820) - 809306..810031 (+) 726 WP_106736768.1 RDD family protein -
  C7A17_RS03825 (C7A17_03825) - 810028..811008 (+) 981 WP_106736769.1 stage II sporulation protein M -
  C7A17_RS03830 (C7A17_03830) - 810995..812572 (+) 1578 WP_106736770.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 55372.36 Da        Isoelectric Point: 5.8618

>NTDB_id=236897 C7A17_RS03810 WP_106736766.1 806833..808278(-) (sbcB) [Ectopseudomonas mendocina strain NEB698]
MASSIFWYDYETTGINPRSDRPLQVAGIRTDESLNEIGEPLNIYCQPSDDILPHPAACLVTGIDPQRLRQQGLDEGEFVT
RVHAALSAPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDLVRTAYALRPEGIEWPQEDGRVTLKLE
RLTQANGIDHGQAHDALSDVRATIGLARLLRERQPRLYDFLYQLRSKQRVMDQIRLLQPLLHVSGRFSAVRHYLAPVLPL
AWHPRNRNALIVCDLQADPSVLLDLDAETLRSRLYTRHEDLAEGETPVPLKLLHINRCPVVAPLSVLRDADRQRLRLEWS
LCERNAEMLRTAQALWQDKLATIYHEEGFAGSSDPEQQLYDGFIGDRDRRLCEQVRNAQPQELASRDWPFDDARLPELLF
RYRARNFPETLSPPERQRWTDFCRQRLSNPEFGAPNTLAQFQLALEERCGNCSPGQLQLLQQWQAYAQQLQVRYGLEKSN
G

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=236897 C7A17_RS03810 WP_106736766.1 806833..808278(-) (sbcB) [Ectopseudomonas mendocina strain NEB698]
ATGGCCTCCAGCATCTTCTGGTACGACTATGAAACCACTGGCATCAACCCGCGTAGCGACCGGCCGCTGCAGGTGGCTGG
TATTCGCACCGACGAGTCGCTCAACGAGATTGGTGAGCCGCTGAACATCTACTGTCAGCCCAGCGACGATATCCTGCCGC
ATCCGGCTGCGTGCCTGGTCACCGGTATCGACCCGCAGCGCCTGCGTCAGCAAGGTCTGGACGAGGGCGAGTTCGTCACC
CGCGTGCATGCTGCACTATCTGCACCGGGTACCTGCGGTGCCGGCTACAACAGCCTGCGCTTCGATGATGAGGTGACCCG
TTACAGCCTCTACCGCAACTTCTTCGACCCTTATGCCCGTGAATGGCAAGGGGGTAACAGCCGCTGGGATCTGATCGATC
TGGTGCGCACGGCATACGCGCTTCGCCCCGAGGGTATCGAGTGGCCGCAAGAGGATGGGCGGGTGACGCTCAAGCTGGAG
CGCCTGACGCAAGCCAACGGCATCGATCATGGTCAGGCCCACGATGCGCTTTCCGACGTGCGCGCTACCATTGGCTTGGC
TCGTCTGCTGCGTGAGCGCCAACCGCGTCTGTACGACTTCCTCTATCAGTTGCGCAGCAAGCAGCGGGTGATGGATCAGA
TTCGCCTGCTGCAGCCGCTGCTGCATGTTTCCGGGCGTTTCTCGGCTGTGCGTCATTACCTCGCGCCGGTCCTGCCGCTG
GCCTGGCATCCGCGTAACCGCAATGCATTGATCGTCTGCGATCTGCAGGCTGATCCGAGCGTGTTGCTGGATCTGGATGC
CGAGACCTTGCGCAGTCGTCTATACACTCGCCACGAGGATCTTGCAGAGGGGGAGACGCCAGTCCCGCTGAAACTGCTGC
ATATCAATCGCTGCCCGGTGGTCGCCCCCTTGTCTGTGCTACGTGATGCGGATCGACAGCGCCTGAGGCTGGAGTGGTCG
CTCTGCGAGCGTAATGCCGAAATGCTCAGGACGGCACAGGCGCTATGGCAGGACAAGCTGGCGACGATTTACCACGAGGA
AGGATTCGCTGGCAGCTCTGACCCAGAGCAGCAGCTATACGATGGGTTCATAGGCGATCGTGACCGCCGTCTGTGTGAGC
AGGTGCGCAATGCTCAACCGCAGGAGCTGGCTTCGCGAGACTGGCCATTCGACGACGCACGCCTGCCCGAGTTGTTGTTT
CGCTACCGTGCACGCAACTTCCCGGAAACGCTTTCACCGCCCGAGCGGCAACGCTGGACGGACTTTTGCCGTCAACGCCT
GAGTAACCCGGAGTTTGGCGCGCCCAATACGTTGGCGCAATTTCAGTTGGCACTCGAGGAGAGGTGTGGCAATTGCAGTC
CGGGCCAGCTGCAATTGCTTCAGCAATGGCAGGCTTATGCACAGCAATTGCAGGTGCGCTACGGCTTGGAAAAATCGAAC
GGGTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(205-469)

Exonuclease (RNase_T)

(7-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

47.146

98.337

0.464