Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   C7A17_RS01625 Genome accession   NZ_CP027657
Coordinates   327619..328233 (+) Length   204 a.a.
NCBI ID   WP_106736365.1    Uniprot ID   A0A7G5DJ15
Organism   Ectopseudomonas mendocina strain NEB698     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 322619..333233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS01605 (C7A17_01605) - 324502..325023 (+) 522 WP_106736361.1 CsiV family protein -
  C7A17_RS01610 (C7A17_01610) nagZ 325106..326104 (-) 999 WP_106736362.1 beta-N-acetylhexosaminidase -
  C7A17_RS01615 (C7A17_01615) - 326116..326643 (-) 528 WP_106736363.1 L,D-transpeptidase -
  C7A17_RS01620 (C7A17_01620) - 326685..327392 (-) 708 WP_106736364.1 TetR/AcrR family transcriptional regulator -
  C7A17_RS01625 (C7A17_01625) dinR/lexA 327619..328233 (+) 615 WP_106736365.1 transcriptional repressor LexA Regulator
  C7A17_RS01630 (C7A17_01630) sulA 328252..328722 (+) 471 WP_106736366.1 SOS-induced cell division inhibitor SulA -
  C7A17_RS01635 (C7A17_01635) - 328783..329019 (-) 237 WP_106736367.1 hypothetical protein -
  C7A17_RS01640 (C7A17_01640) - 329100..329618 (-) 519 WP_106736368.1 DUF6586 family protein -
  C7A17_RS01645 (C7A17_01645) topA 329700..332306 (-) 2607 WP_106736369.1 type I DNA topoisomerase -
  C7A17_RS01650 (C7A17_01650) - 332411..332653 (-) 243 WP_106736370.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22485.82 Da        Isoelectric Point: 5.7340

>NTDB_id=236894 C7A17_RS01625 WP_106736365.1 327619..328233(+) (dinR/lexA) [Ectopseudomonas mendocina strain NEB698]
MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPGAANEDE
GLPVIGRVAAGAPILAQQHVEESCQINPAFFQPKADYLLRVRGMSMKDIGIFDGDLLAVHTTREARNGQIVVARIDDEVT
VKRFKREGNKVWLIAENPEFSPIEVDLEHQDLVIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=236894 C7A17_RS01625 WP_106736365.1 327619..328233(+) (dinR/lexA) [Ectopseudomonas mendocina strain NEB698]
ATGTTGAAACTGACGCCACGCCAAGCCGAGATTCTCGCGTTCATCAAGCGCTGCCTGGAAGACAATGGTTATCCGCCGAC
TCGAGCGGAAATCGCTCAGGAGCTTGGGTTCAAATCCCCCAATGCTGCCGAGGAACATCTCAAGGCCCTCGCACGCAAAG
GCGCCATCGAGATGACACCGGGCGCTTCTCGCGGTATCCGCATTCCAGGCTTCGAGCCAGGCGCAGCCAACGAAGATGAA
GGTCTGCCGGTGATTGGCCGCGTCGCTGCCGGCGCACCGATTCTCGCCCAACAGCACGTCGAAGAATCCTGCCAGATCAA
CCCGGCATTCTTTCAGCCCAAAGCCGACTATTTGCTACGCGTACGCGGCATGAGCATGAAGGACATTGGCATCTTCGATG
GTGATCTACTCGCCGTACACACCACCCGCGAAGCGCGCAACGGTCAGATCGTGGTCGCCCGCATCGACGATGAAGTAACG
GTCAAGCGCTTCAAGCGCGAAGGCAACAAAGTCTGGCTGATAGCCGAGAACCCGGAATTTTCCCCGATCGAAGTGGATCT
CGAGCACCAGGATCTGGTGATCGAAGGTCTGAGCGTCGGCGTGATTCGCCGATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(83-194)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G5DJ15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.835

100

0.392

Multiple sequence alignment