Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   C7A17_RS01395 Genome accession   NZ_CP027657
Coordinates   281663..282019 (-) Length   118 a.a.
NCBI ID   WP_003245164.1    Uniprot ID   A0A1G6U3I8
Organism   Ectopseudomonas mendocina strain NEB698     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 276663..287019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A17_RS01375 (C7A17_01375) - 277526..278494 (-) 969 WP_106736322.1 GTP 3',8-cyclase MoaA -
  C7A17_RS01380 (C7A17_01380) - 278582..279205 (-) 624 WP_106736323.1 TetR/AcrR family transcriptional regulator -
  C7A17_RS01385 (C7A17_01385) - 279281..280414 (+) 1134 WP_106736324.1 aminotransferase class V-fold PLP-dependent enzyme -
  C7A17_RS01390 (C7A17_01390) - 280771..281553 (-) 783 WP_106736325.1 TatD family hydrolase -
  C7A17_RS01395 (C7A17_01395) pilZ 281663..282019 (-) 357 WP_003245164.1 PilZ domain-containing protein Machinery gene
  C7A17_RS01400 (C7A17_01400) - 282146..283138 (-) 993 WP_106736326.1 DNA polymerase III subunit delta' -
  C7A17_RS01405 (C7A17_01405) tmk 283131..283763 (-) 633 WP_106736327.1 dTMP kinase -
  C7A17_RS01410 (C7A17_01410) mltG 283773..284828 (-) 1056 WP_106736328.1 endolytic transglycosylase MltG -
  C7A17_RS01415 (C7A17_01415) pabC 284832..285647 (-) 816 WP_106736329.1 aminodeoxychorismate lyase -
  C7A17_RS01420 (C7A17_01420) fabF 285647..286891 (-) 1245 WP_106736330.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12820.89 Da        Isoelectric Point: 9.9700

>NTDB_id=236891 C7A17_RS01395 WP_003245164.1 281663..282019(-) (pilZ) [Ectopseudomonas mendocina strain NEB698]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIKNGGLFIPTNKSYKLGDEVFMLLNLMDEPEKIPVAGKVVWITPKGAQG
NRAAGVGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=236891 C7A17_RS01395 WP_003245164.1 281663..282019(-) (pilZ) [Ectopseudomonas mendocina strain NEB698]
ATGAGCCTGCCACCCAATCTGGGCCCCCGTAACGGAATTCTGTCCCTGACCATCAAGGACAAGTCCGTGCTCTATGCGGC
GTACATGCCTTTTATCAAGAATGGCGGCCTCTTCATCCCCACCAACAAGAGCTACAAGCTCGGTGACGAAGTGTTCATGC
TGCTCAATCTGATGGACGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTGGTGTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGCGCTGCCGGTGTCGGCGTGCAGTTCAATGACGGTGACAACACCGCGCGCAACAAGATCGAGACCTACCTGGCCGG
TGCGCTGAAATCCGACCGCCCGACCCATACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G6U3I8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

50.926

91.525

0.466
  pilZ Legionella pneumophila strain ERS1305867

50.926

91.525

0.466