Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DSM101856_RS05930 Genome accession   NZ_CP027639
Coordinates   1144950..1145444 (+) Length   164 a.a.
NCBI ID   WP_002786475.1    Uniprot ID   -
Organism   Campylobacter coli strain meC0280     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139950..1150444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM101856_RS05915 (DSM101856_01187) - 1141328..1142509 (-) 1182 WP_193228010.1 metal-dependent hydrolase -
  DSM101856_RS05920 (DSM101856_01188) - 1142518..1143417 (-) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DSM101856_RS05925 (DSM101856_01189) gatB 1143417..1144835 (-) 1419 WP_002786474.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  DSM101856_RS05930 (DSM101856_01190) luxS 1144950..1145444 (+) 495 WP_002786475.1 S-ribosylhomocysteine lyase Regulator
  DSM101856_RS05935 (DSM101856_01191) - 1145760..1146752 (+) 993 WP_002788130.1 isopenicillin N synthase family oxygenase -
  DSM101856_RS05940 (DSM101856_01192) - 1146766..1147536 (+) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  DSM101856_RS05945 (DSM101856_01193) metE 1147559..1149823 (+) 2265 WP_002777360.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.19 Da        Isoelectric Point: 5.0135

>NTDB_id=236865 DSM101856_RS05930 WP_002786475.1 1144950..1145444(+) (luxS) [Campylobacter coli strain meC0280]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGIMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=236865 DSM101856_RS05930 WP_002786475.1 1144950..1145444(+) (luxS) [Campylobacter coli strain meC0280]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCTGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATATTTTAAATGTGAGCGATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGCGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCATAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701