Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   CEQ50_RS18190 Genome accession   NZ_CP022104
Coordinates   715054..716154 (-) Length   366 a.a.
NCBI ID   WP_017048780.1    Uniprot ID   -
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 710054..721154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS18175 (CEQ50_18220) glpD 710121..711665 (+) 1545 WP_088733424.1 glycerol-3-phosphate dehydrogenase -
  CEQ50_RS18180 (CEQ50_18225) - 711809..712474 (+) 666 WP_019282225.1 PilZ domain-containing protein -
  CEQ50_RS18185 (CEQ50_18230) luxQ 712492..715038 (-) 2547 WP_088733425.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  CEQ50_RS18190 (CEQ50_18235) luxP 715054..716154 (-) 1101 WP_017048780.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  CEQ50_RS18195 (CEQ50_18240) - 716379..717530 (-) 1152 WP_088733426.1 conjugal transfer protein TraF -
  CEQ50_RS18200 (CEQ50_18245) - 717626..717949 (-) 324 WP_013867913.1 GIY-YIG nuclease family protein -
  CEQ50_RS18205 (CEQ50_18250) - 717950..718603 (-) 654 WP_088733427.1 YceH family protein -
  CEQ50_RS18210 (CEQ50_18255) - 718661..718864 (-) 204 WP_026027876.1 hypothetical protein -
  CEQ50_RS18215 (CEQ50_18260) - 719055..719372 (+) 318 WP_010319897.1 DUF496 family protein -
  CEQ50_RS18220 (CEQ50_18265) - 719680..719931 (+) 252 WP_013867916.1 YgjV family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41702.32 Da        Isoelectric Point: 6.2552

>NTDB_id=236848 CEQ50_RS18190 WP_017048780.1 715054..716154(-) (luxP) [Vibrio anguillarum strain CNEVA NB11008]
MRKILLLSFVFSVSLAASTQAAAQVLNGYWRYQEFLDLHPAQQALTDQMIQAVRQPPAVLSIEQDKPIHISVVYPGQQVS
DYWARNIKAFEMRLDELGIRYQINQVFTRPNVDIRQQSLSLMEAIRNKSDYLVFTLDTIRHRKFIEQLLSSNQTKIILQN
ITTPVKSWGDRQPFMYVGFDHEIGTMKLVDYYKKSAPKNSAYSVLYYSEGYVSDARGDSFIQEMSRDSKYHLASSFYTKA
TRDSAFDATLRILKQTPDINFIYACSTDVALGAMDALQQQNREDITLNGWGGGEAELDALQNSTLDVTIMRVNDDAGVAM
AEAIKWDLEGKPVPTVYSGDFELVTKEVSSAYIEKLKKRAFRYSDH

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=236848 CEQ50_RS18190 WP_017048780.1 715054..716154(-) (luxP) [Vibrio anguillarum strain CNEVA NB11008]
ATGAGAAAAATCCTGCTCCTTTCATTTGTGTTCAGTGTCAGTTTGGCAGCCTCCACTCAGGCTGCAGCGCAAGTTTTAAA
TGGTTATTGGCGATATCAAGAGTTTTTAGATCTTCATCCTGCGCAACAGGCTCTTACCGACCAGATGATACAGGCAGTGC
GTCAACCTCCCGCTGTACTCTCAATAGAGCAAGATAAACCTATTCATATTTCTGTTGTTTATCCAGGTCAACAAGTTTCC
GATTATTGGGCGCGCAATATCAAAGCCTTTGAGATGCGTTTAGACGAACTTGGGATTAGATACCAAATTAACCAAGTCTT
CACTCGTCCGAATGTCGATATTCGCCAACAAAGTTTATCGTTGATGGAAGCGATCAGAAACAAATCCGATTACTTGGTGT
TTACGCTTGATACCATCCGCCACCGTAAATTTATCGAGCAGTTGTTAAGTTCAAATCAAACCAAAATTATTCTGCAAAAT
ATCACTACGCCGGTAAAAAGTTGGGGAGATCGCCAGCCTTTTATGTACGTGGGGTTTGATCATGAAATTGGCACAATGAA
ACTGGTGGATTACTACAAAAAGTCGGCGCCAAAGAATAGTGCTTATTCCGTACTCTATTATTCTGAAGGCTATGTTAGCG
ATGCTCGCGGTGATAGTTTTATCCAAGAAATGAGTCGAGACAGCAAATATCACTTGGCCTCTTCGTTTTATACAAAAGCG
ACACGAGATAGTGCATTTGATGCAACTTTGCGTATTCTTAAACAAACACCAGATATTAATTTTATTTACGCATGCTCTAC
TGATGTTGCACTCGGTGCCATGGATGCGTTGCAGCAGCAAAATAGAGAAGATATTACGTTAAACGGCTGGGGCGGTGGTG
AGGCTGAATTGGACGCGCTGCAAAATAGCACACTTGATGTGACTATCATGCGTGTCAATGATGATGCCGGTGTTGCTATG
GCGGAAGCCATTAAGTGGGATCTTGAAGGAAAGCCGGTACCTACGGTTTACTCTGGTGATTTTGAGTTGGTAACCAAAGA
GGTCTCTTCAGCGTATATTGAAAAGCTCAAAAAACGAGCATTTCGTTACTCTGACCATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.889

98.361

0.628

Multiple sequence alignment