Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   CEQ50_RS10195 Genome accession   NZ_CP022103
Coordinates   2239679..2243041 (-) Length   1120 a.a.
NCBI ID   WP_017048517.1    Uniprot ID   -
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2234679..2248041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS10175 (CEQ50_10210) - 2235656..2236084 (+) 429 WP_013856359.1 HIT family protein -
  CEQ50_RS10180 (CEQ50_10215) - 2236181..2236411 (-) 231 WP_017045231.1 FeoC-like transcriptional regulator -
  CEQ50_RS10185 (CEQ50_10220) feoB 2236408..2238681 (-) 2274 WP_088732745.1 Fe(2+) transporter permease subunit FeoB -
  CEQ50_RS10190 (CEQ50_10225) - 2238681..2238908 (-) 228 WP_088732746.1 FeoA family protein -
  CEQ50_RS10195 (CEQ50_10230) tfoS 2239679..2243041 (-) 3363 WP_017048517.1 AraC family transcriptional regulator Regulator
  CEQ50_RS10200 (CEQ50_10235) znuA 2243214..2244092 (-) 879 WP_017048516.1 zinc ABC transporter substrate-binding protein ZnuA -
  CEQ50_RS10205 (CEQ50_10240) znuC 2244177..2244959 (+) 783 WP_013856354.1 zinc ABC transporter ATP-binding protein ZnuC -
  CEQ50_RS10210 (CEQ50_10245) znuB 2244952..2245731 (+) 780 WP_013856353.1 zinc ABC transporter permease subunit ZnuB -
  CEQ50_RS10215 (CEQ50_10250) sucD 2245809..2246681 (-) 873 WP_088732747.1 succinate--CoA ligase subunit alpha -
  CEQ50_RS10220 (CEQ50_10255) sucC 2246681..2247847 (-) 1167 WP_088729032.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1120 a.a.        Molecular weight: 127948.74 Da        Isoelectric Point: 6.8114

>NTDB_id=236833 CEQ50_RS10195 WP_017048517.1 2239679..2243041(-) (tfoS) [Vibrio anguillarum strain CNEVA NB11008]
MKGKNDYFKPLLWILGFLTLLLAQGTQALDKAPSIFYPLPAQAQGKIFAAQNLFLGEEGGIWIHDVHGKVVFFDGQNILP
RRGSVLSQESENITYLNNAFWTFIDNELYRTYPAQDRELVFSLTPGIIIKKIGSSGNFIWLADETHFYTYHAQTHKLVTY
SFKEMYQLNQASRLIVNDAKFVLSKWVLATNAGVYLSDGESFSHVLSSGKNFIEKLYFSEKRRELVIGTLNGGLIIDVED
PKRQQKLVGDSHVLSVAETDQEYWIGTEDGLFVHSFLTGKTVKLESNDQDNNGLPGNKIYSLVNDLQGGIWIATDKGIRY
FSLFGQKFKRHSIAQLNNNPITKIVTRSDNKGYLFLTRQGLYQVDAEDWQEPKLIFPGEVHDVAQIDDHSLWIATHTGIV
IYHLQTKKMIETSVLPLKLRSNDTKHLEFDHEGLLWGATGNHLWSYQLADNSLTDFGSEWFVDAFLPAKIIKLKSTRRGV
FIGTDHGVYLFDKGKIVFLRATSHYGQSIDIFESSKGDVWFASAYGVFVLAHDRSDIRSIDMVEENISPKCLTETGNGIW
LTSSQGISLYNPMGEMVKHFGDPHGLMNNEFKSGVCESSIINNQQQLLLGSRFGLVTAWSSELTVATPPNTNIIFSQVNV
DHIPVMFGRGRFQTLELEYGSSISFLFGALPESRALSLEYRIAGDKEWQRLESAQLTLDHLLPGHYRLLVRNYSPNPQNS
MINSLSFIVDNPWYWSSWAIVLYLCLSIGLIAFASWWRSRWVTKVNRKLKAQVALKTDQLRHQSKIVLTNNQQLRKQLQI
RHIVVEQMLDSITPTLNQLIYRSQLHQLARLESLALKVKRELALLRNVRNDKTATQLLYDLSIILNSCVDGWREEFAKAN
ISLAVNNELKQAYIESAHFNLDIIFNTLLSDAVKRLYRNQELQIHCYEREKRLFIVMIDCGDQVQSINSDKRISGFELEE
MQLLVQRSGGEIHIFSSPERNLVELSWPSVELVSDAPEMIVVEEHSEDKFIDVTEKEWLKKVEKLVHNYYSDPEFSTSSA
AKSLFVSERSLQRRFKAITNKTFKEYLNEIRLEKACQYLLAGGKVAQVAFDCGFNDPSYFSQRFKHHFGLSPTQFVDDNE

Nucleotide


Download         Length: 3363 bp        

>NTDB_id=236833 CEQ50_RS10195 WP_017048517.1 2239679..2243041(-) (tfoS) [Vibrio anguillarum strain CNEVA NB11008]
TTGAAAGGAAAGAACGACTATTTTAAACCTTTGCTCTGGATCTTGGGTTTTCTGACGCTTTTATTAGCGCAGGGGACACA
AGCTCTAGACAAAGCACCTTCCATCTTCTATCCATTGCCAGCTCAGGCTCAAGGAAAAATTTTTGCCGCACAAAATTTGT
TTTTAGGTGAAGAAGGGGGAATTTGGATACACGATGTGCATGGCAAAGTGGTTTTCTTTGATGGGCAAAACATCCTTCCC
CGGCGTGGCTCAGTGCTTTCACAAGAGAGCGAAAATATTACCTATCTTAATAACGCTTTTTGGACGTTCATTGATAATGA
ACTTTATCGAACTTATCCCGCACAAGATCGCGAATTAGTATTTAGCTTAACGCCTGGAATCATCATAAAAAAAATAGGTT
CGTCAGGTAATTTCATCTGGTTAGCCGATGAGACGCACTTTTATACATACCATGCGCAAACCCACAAGTTAGTTACTTAT
TCTTTTAAAGAAATGTATCAATTAAATCAAGCTAGTCGATTGATCGTTAATGATGCGAAGTTTGTGCTTTCTAAATGGGT
ATTAGCCACTAATGCTGGAGTCTATCTGTCAGATGGAGAGAGTTTTTCTCACGTGCTCAGCTCTGGTAAAAACTTCATTG
AGAAACTCTATTTTTCCGAGAAACGTAGAGAACTTGTGATTGGAACGCTCAATGGTGGGCTGATTATTGATGTCGAGGAC
CCAAAGCGCCAACAAAAGTTGGTTGGAGATTCCCATGTATTATCTGTTGCTGAGACAGATCAAGAGTATTGGATTGGTAC
TGAAGATGGATTATTTGTTCATTCGTTTTTGACAGGTAAAACCGTCAAGTTAGAAAGTAATGACCAAGACAACAATGGGT
TACCAGGCAATAAAATTTATTCATTGGTCAATGACTTACAAGGTGGGATTTGGATCGCAACGGATAAAGGTATTCGTTAC
TTTTCTCTGTTTGGACAAAAATTTAAGCGCCATTCCATTGCACAGCTCAACAATAATCCCATAACAAAAATTGTGACAAG
GTCAGATAATAAAGGGTATTTGTTTTTAACTCGACAAGGGTTGTACCAAGTCGATGCTGAAGATTGGCAAGAGCCTAAAC
TTATTTTCCCTGGAGAAGTGCATGATGTCGCTCAAATAGATGATCATTCTCTATGGATAGCTACACATACAGGCATCGTT
ATTTATCACTTGCAGACAAAAAAGATGATAGAAACGAGCGTTTTACCTCTGAAGCTGCGTTCGAATGATACTAAACACCT
TGAATTTGATCATGAAGGACTGTTGTGGGGAGCAACAGGTAACCATTTGTGGTCATATCAGTTGGCCGATAACTCGCTAA
CCGATTTCGGTTCTGAATGGTTTGTTGATGCATTTTTGCCTGCAAAAATAATAAAACTTAAGTCAACTCGGCGAGGGGTA
TTTATCGGCACTGACCATGGTGTTTATCTTTTTGACAAAGGCAAAATTGTTTTTCTCCGAGCGACTAGTCATTATGGACA
AAGCATTGATATATTTGAGAGTAGCAAGGGTGATGTTTGGTTTGCTAGTGCTTATGGCGTCTTTGTTTTGGCACATGATC
GTAGTGATATTCGATCTATTGATATGGTTGAAGAGAATATTAGCCCCAAATGTTTAACTGAAACGGGCAACGGTATTTGG
CTGACTTCCTCACAAGGAATCTCGCTCTATAATCCTATGGGTGAGATGGTAAAGCATTTTGGTGATCCACACGGATTGAT
GAATAATGAATTTAAAAGTGGAGTTTGCGAATCAAGTATTATCAATAACCAACAGCAGTTGCTGCTAGGTTCCCGTTTTG
GCTTAGTGACAGCATGGTCCTCTGAACTCACGGTTGCTACCCCTCCTAATACCAATATTATCTTTAGCCAAGTGAATGTC
GATCACATTCCTGTCATGTTCGGTCGTGGTCGTTTTCAGACACTAGAACTGGAATATGGAAGTTCGATAAGCTTTTTGTT
TGGTGCATTGCCAGAATCGAGAGCCTTATCATTGGAGTATCGTATAGCAGGGGATAAGGAGTGGCAGAGATTAGAAAGTG
CTCAGTTGACACTTGATCACCTGTTACCTGGACACTATCGTTTGCTGGTGAGAAATTACAGTCCAAATCCGCAAAACAGT
ATGATAAACAGTCTATCATTTATTGTGGATAACCCGTGGTATTGGTCTTCATGGGCTATTGTTCTTTACCTTTGCCTTTC
TATAGGCCTTATTGCTTTTGCTTCATGGTGGCGATCTCGTTGGGTTACCAAAGTAAACCGAAAGTTAAAAGCTCAGGTGG
CCTTGAAAACGGATCAACTACGGCATCAAAGCAAAATTGTTTTGACTAATAACCAGCAGTTGCGCAAGCAATTACAAATT
CGCCATATCGTTGTTGAACAGATGTTAGATTCTATTACACCTACATTAAATCAGCTGATTTATCGCTCGCAACTCCATCA
ACTCGCGCGACTTGAGTCTTTAGCTTTAAAAGTAAAACGTGAACTGGCGTTACTTCGTAATGTAAGAAATGATAAAACAG
CGACTCAGTTGCTCTACGATCTATCGATCATCTTGAACTCTTGTGTGGACGGATGGCGTGAAGAGTTCGCGAAAGCGAAT
ATTTCGTTGGCGGTGAACAATGAGCTTAAACAAGCTTATATTGAATCTGCCCATTTTAACCTAGACATCATTTTCAATAC
GCTACTGTCTGATGCGGTAAAACGTCTTTACAGAAATCAAGAGCTACAAATTCATTGTTATGAAAGGGAGAAAAGACTGT
TTATTGTGATGATTGACTGTGGCGATCAGGTGCAGTCTATCAATAGTGATAAGCGTATCTCTGGTTTTGAACTAGAGGAA
ATGCAACTGTTAGTACAGCGCAGTGGTGGGGAAATACATATTTTTTCATCGCCAGAACGAAATTTAGTTGAGCTTTCTTG
GCCATCAGTTGAGCTTGTGAGTGATGCACCTGAAATGATCGTCGTAGAGGAGCATTCAGAGGACAAGTTTATTGATGTAA
CGGAAAAAGAGTGGCTTAAAAAAGTAGAAAAATTGGTACACAATTACTATTCAGATCCTGAATTTAGTACCTCTAGTGCG
GCCAAATCACTCTTCGTATCGGAGCGTAGTTTGCAGCGTCGTTTTAAAGCGATCACCAATAAAACATTCAAAGAGTATCT
AAATGAGATCCGCTTAGAGAAAGCGTGCCAATATTTGCTCGCAGGAGGAAAAGTCGCCCAAGTCGCTTTTGATTGTGGGT
TTAATGATCCGTCTTATTTCAGCCAAAGATTTAAACATCACTTCGGTTTATCGCCAACCCAATTTGTTGATGATAACGAG
TAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1041-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

49.157

100

0.495

Multiple sequence alignment