Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   DSM104627_RS05565 Genome accession   NZ_CP027638
Coordinates   1107821..1108201 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain meC0467     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1102821..1113201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104627_RS05540 (DSM104627_01124) aspS 1103334..1105085 (+) 1752 WP_002822668.1 aspartate--tRNA ligase -
  DSM104627_RS05545 (DSM104627_01125) - 1105082..1105657 (+) 576 WP_002781658.1 adenylate kinase -
  DSM104627_RS05550 (DSM104627_01126) ppa 1105667..1106185 (+) 519 WP_002776378.1 inorganic diphosphatase -
  DSM104627_RS05555 (DSM104627_01127) msrA 1106233..1106733 (+) 501 WP_002792204.1 peptide-methionine (S)-S-oxide reductase MsrA -
  DSM104627_RS05560 (DSM104627_01128) - 1106956..1107831 (-) 876 WP_002818784.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  DSM104627_RS05565 (DSM104627_01129) dprB 1107821..1108201 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  DSM104627_RS05570 (DSM104627_01130) dprA 1108198..1108968 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  DSM104627_RS05575 (DSM104627_01131) - 1108958..1110010 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  DSM104627_RS05580 (DSM104627_01132) ilvC 1110013..1111035 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  DSM104627_RS05585 (DSM104627_01133) - 1111158..1113092 (+) 1935 WP_002844636.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=236830 DSM104627_RS05565 WP_002776373.1 1107821..1108201(-) (dprB) [Campylobacter coli strain meC0467]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=236830 DSM104627_RS05565 WP_002776373.1 1107821..1108201(-) (dprB) [Campylobacter coli strain meC0467]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421