Detailed information NTG0236829

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: CEQ50_RS08420
• Genome accession: NZ_CP022103
• Coordinates: 1860419..1861843 (+)
• Length: 474 a.a.
• NCBI ID: WP_088732569.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain CNEVA NB11008
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1855419..1866843

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEQ50_RS08405 (CEQ50_08440)	-	1855821..1857779 (-)	1959	WP_088732567.1	methyl-accepting chemotaxis protein	-
CEQ50_RS08410 (CEQ50_08445)	-	1857996..1858679 (+)	684	WP_088732568.1	NAD(P)H-binding protein	-
CEQ50_RS08415 (CEQ50_08450)	-	1858900..1860267 (+)	1368	WP_026028454.1	L-cystine transporter	-
CEQ50_RS08420 (CEQ50_08455)	sbcB	1860419..1861843 (+)	1425	WP_088732569.1	exodeoxyribonuclease I	Machinery gene
CEQ50_RS08425 (CEQ50_08460)	-	1861968..1862300 (+)	333	WP_033197434.1	CidA/LrgA family protein	-
CEQ50_RS08430 (CEQ50_08465)	-	1862300..1862980 (+)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
CEQ50_RS08435 (CEQ50_08470)	cdd	1863189..1864076 (+)	888	WP_088732570.1	cytidine deaminase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54661.12 Da
• Isoelectric Point: 5.3353

>NTDB_id=236829 CEQ50_RS08420 WP_088732569.1 1860419..1861843(+) (sbcB) [Vibrio anguillarum strain CNEVA NB11008]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNSVIVVDLAKNPQPLIDLSSEELYQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTAENAD
HIGVDRNLCLEHLALIKQYPEIREKLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=236829 CEQ50_RS08420 WP_088732569.1 1860419..1861843(+) (sbcB) [Vibrio anguillarum strain CNEVA NB11008]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCAGGCGTTCGCACCGATATGGATTTTAATATTATTGGCGAACCACTGGTCATCTATTGCCAACCACCAGCGG
ACTATTTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTGGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGCCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTACACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCGCTACGCCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGTTGGAGCATCTCTCGGTTGCCAATGGCATCGAACACGCAAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTGGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATTCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGTATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCCCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCATCAAGCAGTATCCAGAGATTAGAGAAAAGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCGG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGACCCTGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTGACATTAAGTGACGAAGAGCAAAGGCGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTCGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	81.184	99.789	0.81