Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CEQ50_RS02920 Genome accession   NZ_CP022103
Coordinates   588985..589503 (+) Length   172 a.a.
NCBI ID   WP_010319518.1    Uniprot ID   A0A233HL62
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 583985..594503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS02910 (CEQ50_02920) - 584397..587252 (+) 2856 WP_088731704.1 M16 family metallopeptidase -
  CEQ50_RS02915 (CEQ50_02925) gshA 587355..588920 (+) 1566 WP_088733042.1 glutamate--cysteine ligase -
  CEQ50_RS02920 (CEQ50_02930) luxS 588985..589503 (+) 519 WP_010319518.1 S-ribosylhomocysteine lyase Regulator
  CEQ50_RS02925 (CEQ50_02935) - 589587..590861 (-) 1275 WP_017046996.1 HlyC/CorC family transporter -
  CEQ50_RS02930 (CEQ50_02940) - 590945..591739 (-) 795 WP_026027563.1 cytochrome C assembly family protein -
  CEQ50_RS02935 (CEQ50_02945) ffh 592044..593435 (+) 1392 WP_081245216.1 signal recognition particle protein -
  CEQ50_RS02940 (CEQ50_02950) rpsP 593650..593898 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  CEQ50_RS02945 (CEQ50_02955) rimM 593928..594482 (+) 555 WP_013857691.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18955.76 Da        Isoelectric Point: 5.2114

>NTDB_id=236814 CEQ50_RS02920 WP_010319518.1 588985..589503(+) (luxS) [Vibrio anguillarum strain CNEVA NB11008]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGHDVEIIDISP
MGCRTGFYMSLIGAPTEAQVAQAWLAAMHDVLKVESQDQIPELNEYQCGTASMHSLTEAKEIAQAIITAGIAVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=236814 CEQ50_RS02920 WP_010319518.1 588985..589503(+) (luxS) [Vibrio anguillarum strain CNEVA NB11008]
ATGCCATTACTCGACAGTTTTACTGTAGATCACACTCGTATGCATGCGCCTGCGGTACGTGTGGCAAAAAATATGCAGAC
GCCTAAAGGGGATACAATCACCGTATTTGATCTCCGTTTTACTGCTCCAAACAAAGATATTCTTTCAGAAAAAGGGATCC
ACACTTTAGAGCATTTATACGCTGGCTTTATGCGCGCGCACTTAAATGGTCATGATGTAGAAATCATCGACATCTCACCT
ATGGGCTGCCGCACAGGTTTTTACATGAGTTTGATTGGCGCGCCAACAGAAGCGCAAGTGGCACAAGCGTGGTTAGCGGC
GATGCATGATGTGCTAAAAGTAGAGAGCCAAGATCAGATCCCTGAACTAAACGAATACCAATGTGGTACAGCCTCAATGC
ACTCGTTAACAGAAGCTAAAGAGATTGCTCAAGCGATTATCACGGCAGGTATTGCGGTGAATAAAAATGATGAGCTTGCT
TTACCTGAGTCGATGCTCAAAGAGCTGAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HL62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment