Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CEQ50_RS02780 Genome accession   NZ_CP022103
Coordinates   562406..563407 (+) Length   333 a.a.
NCBI ID   WP_017047531.1    Uniprot ID   -
Organism   Vibrio anguillarum strain CNEVA NB11008     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 557406..568407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ50_RS02750 (CEQ50_02760) ispD 557546..558277 (+) 732 WP_088731686.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CEQ50_RS02755 (CEQ50_02765) ispF 558270..558755 (+) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CEQ50_RS02760 (CEQ50_02770) truD 558967..560010 (+) 1044 WP_420895523.1 tRNA pseudouridine(13) synthase TruD -
  CEQ50_RS02765 (CEQ50_02775) surE 560023..560769 (+) 747 WP_088731690.1 5'/3'-nucleotidase SurE -
  CEQ50_RS02770 (CEQ50_02780) - 560769..561395 (+) 627 WP_088728605.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  CEQ50_RS02775 (CEQ50_02785) nlpD 561401..562333 (+) 933 WP_198300485.1 murein hydrolase activator NlpD -
  CEQ50_RS02780 (CEQ50_02790) rpoS 562406..563407 (+) 1002 WP_017047531.1 RNA polymerase sigma factor RpoS Regulator
  CEQ50_RS02785 (CEQ50_02795) mutS 563540..566128 (-) 2589 WP_088731694.1 DNA mismatch repair protein MutS -
  CEQ50_RS02790 (CEQ50_02800) cysM 566372..567262 (-) 891 WP_047688250.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 38272.18 Da        Isoelectric Point: 4.4454

>NTDB_id=236811 CEQ50_RS02780 WP_017047531.1 562406..563407(+) (rpoS) [Vibrio anguillarum strain CNEVA NB11008]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
ANNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ
GLNMEALFNVEYD

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=236811 CEQ50_RS02780 WP_017047531.1 562406..563407(+) (rpoS) [Vibrio anguillarum strain CNEVA NB11008]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGACTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGATTTGACGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCCCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCTTAGCTTTACTCGATCTAATTGAAGAGGGTAATTTAGGCTTGATCCGTGCGGTAGAAAAAT
TTGATCCAGAACGTGGCTTTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAAC
CAAACGCGCACTATCCGTTTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGCTATCGCA
GAAGTTAGATCATGAACCTACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTGC
GTCTTAACGAGCGTATCAGTTCTGTTGATACACCGATTGGCGGCGATGGTGATAAAGCACTACTCGATATCATCCCAGAT
GCGAACAACTCTGATCCTGAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTGAA
CCCAAAACAAAAAGAGGTACTTGCACGCCGTTTTGGGCTATTAGGTTATGAACCGTCCACCTTAGAAGAGGTAGGCCGCG
AAATTAACTTAACTCGTGAACGAGTTCGTCAAATTCAAGTGGAAGGCTTACGTCGTTTGAGAGAGATCTTGGTTAAACAA
GGCTTGAACATGGAAGCGCTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(174-247)

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

86.826

100

0.871

Multiple sequence alignment