Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   CEJ46_RS15650 Genome accession   NZ_CP022102
Coordinates   316722..317903 (-) Length   393 a.a.
NCBI ID   WP_064626676.1    Uniprot ID   -
Organism   Vibrio anguillarum strain JLL237     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 311722..322903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ46_RS15645 (CEJ46_15645) cqsS 314584..316635 (+) 2052 WP_064626675.1 hybrid sensor histidine kinase/response regulator Regulator
  CEJ46_RS15650 (CEJ46_15650) cqsA 316722..317903 (-) 1182 WP_064626676.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CEJ46_RS15655 (CEJ46_15655) - 318103..319077 (-) 975 WP_017045356.1 TDT family transporter -
  CEJ46_RS15660 (CEJ46_15660) clcA 319226..320623 (-) 1398 WP_064626677.1 H(+)/Cl(-) exchange transporter ClcA -
  CEJ46_RS15665 (CEJ46_15665) - 321116..322102 (+) 987 WP_010320211.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43557.34 Da        Isoelectric Point: 6.6121

>NTDB_id=236797 CEJ46_RS15650 WP_064626676.1 316722..317903(-) (cqsA) [Vibrio anguillarum strain JLL237]
MNSRKWRHELPASIQSRIDYFINDLINANANGKHLVLGKRPTKNDIVLQSNDYLSLADHPLIKARLKNAIDKTHDSVFMS
AIFLQDEESKPSLETKFAEFVGFDSCLLSQSGWNANTALLQAVCGPQSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLQKLIARHGPGLIVVDSIYSTIGTIAPLTDLVTIAKEYGCAILVDESHSLGTHGEKGAGLVSELGLTAEVDFITASLAK
TFAYRAGAIWANNNVNHCIPFVGYPAIFSSTILPYEVEALEATLDIIKSADSKRTQLHRNAHTLRRGLNSIGLSVRSESQ
IIALETGDERNTEKVRDYLEENQIFGAVFCRPATSKNKNIIRLSLNSNVTDSQIDTILTVCERAQNDSSLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=236797 CEJ46_RS15650 WP_064626676.1 316722..317903(-) (cqsA) [Vibrio anguillarum strain JLL237]
ATGAATTCACGTAAGTGGAGACACGAACTACCGGCTTCTATACAATCTAGAATTGACTATTTTATCAATGATTTGATTAA
TGCAAATGCTAACGGAAAACATCTAGTCCTAGGGAAAAGGCCAACAAAAAACGACATAGTGTTACAAAGTAATGATTATT
TAAGCTTGGCTGATCATCCATTAATTAAAGCACGGCTGAAAAATGCCATCGATAAAACACATGATAGTGTTTTTATGTCC
GCTATTTTTCTACAAGATGAAGAGTCTAAACCTTCATTAGAAACGAAATTTGCAGAATTTGTAGGCTTTGATAGTTGCCT
TCTTTCTCAATCAGGATGGAATGCTAATACTGCCTTGTTGCAAGCCGTGTGCGGGCCACAAAGTAACGTCTACATTGATT
TTTTTGCTCACATGTCAATGTGGGAAGGTGCTCGTTACGCTAATGCCAATATTCACCCATTCATGCACAATAATTGTGAT
CATTTGCAAAAACTAATCGCTCGACACGGCCCAGGGCTCATTGTGGTTGATTCGATTTACAGCACTATAGGTACGATTGC
ACCACTCACCGATTTGGTCACTATCGCCAAAGAGTATGGATGCGCCATTTTAGTTGATGAGTCGCATTCACTTGGCACAC
ATGGCGAAAAAGGTGCAGGACTTGTCAGTGAATTAGGGTTAACAGCAGAGGTTGACTTTATTACAGCTAGCCTTGCGAAA
ACGTTCGCGTATCGCGCTGGCGCTATTTGGGCGAATAATAATGTGAATCACTGTATCCCTTTTGTGGGTTATCCCGCTAT
TTTTAGTTCAACTATTTTGCCTTATGAAGTCGAAGCGTTAGAAGCGACATTGGACATTATCAAATCAGCCGATTCTAAAA
GAACTCAGTTGCACCGCAATGCACACACACTGCGTCGTGGACTAAATAGTATAGGGCTAAGCGTACGAAGTGAGTCCCAA
ATCATAGCGCTAGAAACCGGAGATGAACGAAATACAGAAAAAGTTCGTGATTATTTAGAAGAGAATCAAATATTTGGTGC
TGTTTTTTGCAGGCCTGCCACTTCAAAGAATAAAAACATTATTCGGCTTTCGTTAAATAGTAATGTCACTGACTCACAAA
TTGACACCATATTAACCGTGTGTGAAAGGGCCCAAAATGATAGCAGTCTCTATTTCAAGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.475

98.473

0.674

Multiple sequence alignment