Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CEJ46_RS02720 Genome accession   NZ_CP022101
Coordinates   551314..551832 (+) Length   172 a.a.
NCBI ID   WP_088720880.1    Uniprot ID   -
Organism   Vibrio anguillarum strain JLL237     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 546314..556832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ46_RS02710 (CEJ46_02710) - 546726..549581 (+) 2856 WP_088720879.1 M16 family metallopeptidase -
  CEJ46_RS02715 (CEJ46_02715) gshA 549684..551249 (+) 1566 WP_088721479.1 glutamate--cysteine ligase -
  CEJ46_RS02720 (CEJ46_02720) luxS 551314..551832 (+) 519 WP_088720880.1 S-ribosylhomocysteine lyase Regulator
  CEJ46_RS02725 (CEJ46_02725) - 551916..553190 (-) 1275 WP_017046996.1 HlyC/CorC family transporter -
  CEJ46_RS02730 (CEJ46_02730) - 553275..554069 (-) 795 WP_026027563.1 cytochrome C assembly family protein -
  CEJ46_RS02735 (CEJ46_02735) ffh 554375..555757 (+) 1383 WP_019281904.1 signal recognition particle protein -
  CEJ46_RS02740 (CEJ46_02740) rpsP 555972..556220 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  CEJ46_RS02745 (CEJ46_02745) rimM 556250..556804 (+) 555 WP_013857691.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18925.73 Da        Isoelectric Point: 5.2114

>NTDB_id=236766 CEJ46_RS02720 WP_088720880.1 551314..551832(+) (luxS) [Vibrio anguillarum strain JLL237]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGHDVEIIDISP
MGCRTGFYMSLIGAPAEAQVAQAWLAAMHDVLKVESQDQIPELNEYQCGTASMHSLTEAKEIAQAIITAGIAVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=236766 CEJ46_RS02720 WP_088720880.1 551314..551832(+) (luxS) [Vibrio anguillarum strain JLL237]
ATGCCATTACTCGACAGTTTTACTGTAGATCACACTCGTATGCATGCGCCTGCGGTACGTGTGGCAAAAAATATGCAGAC
GCCTAAAGGGGATACAATCACCGTATTTGATCTCCGTTTTACTGCTCCAAACAAAGATATTCTTTCGGAAAAAGGGATCC
ACACTTTAGAACATTTATATGCTGGCTTTATGCGCGCGCACTTAAATGGTCATGACGTAGAAATCATCGACATCTCACCT
ATGGGCTGCCGCACAGGTTTTTACATGAGTTTGATTGGCGCGCCAGCAGAAGCGCAAGTGGCGCAAGCGTGGTTAGCGGC
GATGCATGATGTGCTAAAAGTAGAGAGCCAAGATCAGATCCCTGAACTAAACGAATACCAATGTGGTACAGCCTCAATGC
ACTCGTTAACAGAAGCTAAAGAGATTGCTCAAGCGATTATCACGGCAGGTATTGCGGTGAATAAAAATGATGAGCTTGCT
TTACCTGAGTCGATGCTCAAAGAGCTGAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment