Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CEJ46_RS02580 Genome accession   NZ_CP022101
Coordinates   524738..525739 (+) Length   333 a.a.
NCBI ID   WP_017047531.1    Uniprot ID   -
Organism   Vibrio anguillarum strain JLL237     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 519738..530739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ46_RS02550 (CEJ46_02550) ispD 519884..520615 (+) 732 WP_010320457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CEJ46_RS02555 (CEJ46_02555) ispF 520608..521093 (+) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CEJ46_RS02560 (CEJ46_02560) truD 521245..522342 (+) 1098 WP_088720867.1 tRNA pseudouridine(13) synthase TruD -
  CEJ46_RS02565 (CEJ46_02565) surE 522355..523101 (+) 747 WP_010320454.1 5'/3'-nucleotidase SurE -
  CEJ46_RS02570 (CEJ46_02570) - 523101..523727 (+) 627 WP_013857716.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  CEJ46_RS02575 (CEJ46_02575) nlpD 523733..524665 (+) 933 WP_198300690.1 murein hydrolase activator NlpD -
  CEJ46_RS02580 (CEJ46_02580) rpoS 524738..525739 (+) 1002 WP_017047531.1 RNA polymerase sigma factor RpoS Regulator
  CEJ46_RS02585 (CEJ46_02585) mutS 525872..528460 (-) 2589 WP_088720869.1 DNA mismatch repair protein MutS -
  CEJ46_RS02590 (CEJ46_02590) cysM 528703..529593 (-) 891 WP_029388150.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 38272.18 Da        Isoelectric Point: 4.4454

>NTDB_id=236763 CEJ46_RS02580 WP_017047531.1 524738..525739(+) (rpoS) [Vibrio anguillarum strain JLL237]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
ANNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ
GLNMEALFNVEYD

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=236763 CEJ46_RS02580 WP_017047531.1 524738..525739(+) (rpoS) [Vibrio anguillarum strain JLL237]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGATTTGATGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCTCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCTTAGCTTTACTCGATCTAATTGAAGAGGGTAATTTAGGCTTGATTCGTGCGGTAGAAAAAT
TTGATCCAGAACGTGGCTTTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAAC
CAAACGCGCACTATCCGTTTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGCTATCGCA
GAAGTTAGATCATGAACCTACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTGC
GTCTGAACGAGCGTATCAGTTCTGTTGATACACCGATTGGCGGCGATGGTGATAAAGCACTACTCGATATCATCCCAGAT
GCGAACAACTCTGATCCTGAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTAAA
CCCAAAACAAAAAGAGGTACTTGCACGCCGTTTTGGGCTATTAGGTTATGAACCGTCCACCTTAGAAGAGGTAGGCCGCG
AAATTAACTTAACCCGTGAACGAGTTCGTCAAATTCAAGTGGAAGGCCTACGTCGTTTGAGAGAGATCTTGGTTAAACAA
GGCTTGAACATGGAAGCGCTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(174-247)

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

86.826

100

0.871

Multiple sequence alignment