Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CEG15_RS08075 Genome accession   NZ_CP022099
Coordinates   1800045..1802288 (-) Length   747 a.a.
NCBI ID   WP_088728958.1    Uniprot ID   -
Organism   Vibrio anguillarum strain S3 4/9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1795045..1807288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS08055 (CEG15_08055) kdsB 1796335..1797093 (-) 759 WP_088728955.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CEG15_RS08060 (CEG15_08060) - 1797093..1797272 (-) 180 WP_013856535.1 Trm112 family protein -
  CEG15_RS08065 (CEG15_08065) lpxK 1797253..1798260 (-) 1008 WP_088728956.1 tetraacyldisaccharide 4'-kinase -
  CEG15_RS08070 (CEG15_08070) msbA 1798264..1800012 (-) 1749 WP_088728957.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CEG15_RS08075 (CEG15_08075) comEC 1800045..1802288 (-) 2244 WP_088728958.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CEG15_RS08080 (CEG15_08080) - 1802295..1802804 (+) 510 WP_010319231.1 DUF2062 domain-containing protein -
  CEG15_RS08085 (CEG15_08085) lolE 1802943..1804187 (-) 1245 WP_088728959.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  CEG15_RS08090 (CEG15_08090) lolD 1804188..1804874 (-) 687 WP_088728960.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  CEG15_RS08095 (CEG15_08095) lolC 1804867..1806075 (-) 1209 WP_088728961.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  CEG15_RS08100 (CEG15_08100) - 1806241..1806810 (+) 570 WP_017048079.1 hypothetical protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83441.31 Da        Isoelectric Point: 9.5312

>NTDB_id=236736 CEG15_RS08075 WP_088728958.1 1800045..1802288(-) (comEC) [Vibrio anguillarum strain S3 4/9]
MTLLSNYWTLASFSLTAISASYWPWMPDWKWSMPLFAILILSVGYRKLRFLSGVTMALMVIVISGNLLREQSNTIFQTGS
DITINGQVNSFFRQITHGYEGTISIRSINGQTLGIFLRPKVRLIAPLPLKYGDVAEFSITVKPIFGRLNETGFDAEAYSL
SQGIVARATVNNGQSYRIESLPEWRAQWYQKIKTWLADDPNLGILMALTFGERSDISTAQWQALRDSGLIHLVAISGLHI
GIAFGFGYGLGLVLMRLHHRMGWSPFVVGSLCALGYAWLAGFTLPTQRALIMCLLNVAMIVLNVRINTLQRLLMTLSAVL
LIDPFAALSSSFWMSFIAVSVVFYQLSLPQTNRFFLWRLLTMQIGLVLCMLPVTAYFFGGVSTSAALYNLVFIPWFSFVV
VPAIFVALVCTVLTFDGAPMVWHWVAKLLIPVDWSIHYSSLSWFPISGSVLALLSSALLLFVFSPLISRFALAVYSLIVM
VSWLTIPIKTGWRIDVLDVGHGLAVLIEKEGRYVLYDTGASWQGGDHIQATVAPVLNKRGATQLDGLILSHLDNDHAGGR
AEVERVWQPKWKRASQTIAGYQPCIAGEQWQWQQLSFDVIWPPKTVARAYNPHSCVIRIFDPNTGFSVLLPGDVDAMSEW
LLARTEQSLQSHILLVPHHGSRTSSTVALIRKVNPEVAIASLAKGGRWQLPSAQVVQRYQQHGANWLDTGEAGQISVIFG
MQNYQVSSLRISRSQAWYRQMLRNEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=236736 CEG15_RS08075 WP_088728958.1 1800045..1802288(-) (comEC) [Vibrio anguillarum strain S3 4/9]
ATGACTCTCTTATCTAATTACTGGACCCTAGCTTCGTTTTCGCTAACCGCCATTTCTGCTTCTTATTGGCCTTGGATGCC
AGATTGGAAATGGAGTATGCCTCTATTCGCCATTCTTATACTCTCTGTCGGTTATAGAAAACTGCGCTTTCTCTCAGGAG
TAACAATGGCTTTAATGGTCATTGTGATCAGCGGGAACTTATTACGTGAGCAGTCCAACACTATTTTTCAGACAGGTTCG
GATATTACCATAAACGGACAGGTTAACAGCTTTTTTAGACAAATTACTCATGGTTATGAAGGAACAATTTCGATTCGATC
AATCAATGGTCAAACCTTAGGCATTTTTTTGCGGCCCAAGGTGCGATTAATTGCTCCTTTACCGTTGAAGTATGGTGACG
TGGCTGAATTCTCCATCACAGTAAAACCTATCTTTGGTCGGTTAAATGAGACCGGGTTTGATGCAGAGGCGTACTCTTTG
AGCCAAGGTATTGTGGCTCGTGCAACGGTTAATAATGGACAGTCTTATCGCATTGAATCATTACCAGAATGGCGAGCACA
ATGGTATCAGAAGATCAAAACCTGGCTCGCTGATGATCCCAATCTTGGTATTTTAATGGCGCTTACGTTTGGTGAGCGCA
GTGATATTTCAACGGCACAGTGGCAAGCATTACGAGACAGTGGGCTGATTCATTTGGTTGCCATTTCTGGTCTGCACATT
GGCATCGCGTTTGGTTTTGGTTATGGCCTTGGGCTCGTATTGATGCGTTTGCATCATCGCATGGGGTGGTCGCCATTCGT
CGTAGGAAGCTTGTGCGCACTAGGCTATGCTTGGTTGGCTGGCTTTACCTTGCCCACTCAACGCGCACTGATCATGTGTT
TGCTTAATGTGGCGATGATTGTCCTCAATGTCCGTATCAATACGTTGCAGCGACTGCTTATGACGTTATCGGCGGTGCTG
CTCATCGATCCTTTTGCTGCGTTATCCAGTAGCTTTTGGATGTCCTTTATTGCTGTCTCAGTGGTGTTCTACCAACTTTC
TCTACCTCAAACTAATCGATTTTTTTTATGGCGTTTATTGACGATGCAGATTGGGTTAGTGCTGTGTATGCTTCCGGTAA
CCGCTTATTTTTTCGGTGGGGTCAGTACCAGTGCGGCGCTCTATAACTTAGTGTTTATTCCTTGGTTCAGTTTTGTGGTG
GTTCCGGCGATCTTTGTGGCTTTAGTGTGTACGGTTTTGACTTTTGATGGCGCACCTATGGTGTGGCATTGGGTGGCCAA
ATTACTCATTCCAGTTGATTGGTCAATACATTATTCAAGCCTCAGTTGGTTTCCTATTTCTGGGTCTGTTTTGGCTCTGT
TGAGCAGTGCTCTGTTGCTGTTTGTGTTTTCACCGTTGATCTCGCGTTTTGCACTTGCGGTTTACAGCCTCATTGTGATG
GTTTCTTGGCTCACCATTCCGATAAAAACAGGTTGGCGGATTGATGTGTTAGATGTTGGGCATGGGTTGGCAGTGTTGAT
CGAAAAAGAAGGACGCTACGTGCTTTATGATACTGGTGCAAGTTGGCAGGGTGGTGATCACATCCAAGCAACAGTTGCCC
CCGTGTTAAACAAACGGGGAGCTACGCAATTAGACGGGTTGATTTTGAGTCACTTGGATAACGACCATGCAGGTGGAAGA
GCGGAAGTTGAGCGTGTTTGGCAGCCCAAATGGAAACGTGCTAGTCAAACGATAGCGGGTTACCAACCTTGTATTGCTGG
CGAACAATGGCAGTGGCAACAACTCTCTTTTGATGTTATCTGGCCACCAAAAACTGTAGCGCGGGCTTACAATCCTCACT
CTTGTGTGATTCGAATCTTTGACCCAAATACCGGTTTTTCAGTGCTTTTACCCGGGGATGTGGATGCCATGAGTGAGTGG
TTACTTGCGCGAACAGAGCAATCCTTACAAAGTCATATCCTGCTTGTACCGCACCACGGTAGTAGGACATCTTCTACTGT
TGCTTTGATTCGTAAGGTGAATCCTGAGGTCGCTATTGCCTCGCTCGCCAAAGGCGGACGCTGGCAATTACCTTCCGCAC
AGGTTGTTCAACGCTACCAGCAACATGGAGCAAACTGGTTGGATACGGGTGAAGCAGGGCAAATTAGCGTTATTTTTGGC
ATGCAGAATTATCAAGTTAGCAGCTTGCGTATCTCTCGCTCTCAGGCTTGGTATAGGCAGATGCTCCGTAACGAGGTAGA
ATGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-681)

Competence protein (Competence)

(208-462)

Domain of unknown function (DUF4131) (DUF4131)

(24-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

52.005

100

0.521
  comEC Vibrio parahaemolyticus RIMD 2210633

44.211

100

0.45
  comEC Vibrio campbellii strain DS40M4

43.874

100

0.446

Multiple sequence alignment