Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | CEG15_RS07580 | Genome accession | NZ_CP022099 |
| Coordinates | 1694892..1696316 (+) | Length | 474 a.a. |
| NCBI ID | WP_088728920.1 | Uniprot ID | - |
| Organism | Vibrio anguillarum strain S3 4/9 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1689892..1701316
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEG15_RS07570 (CEG15_07570) | - | 1690816..1692951 (+) | 2136 | WP_088728918.1 | type I secretion system permease/ATPase | - |
| CEG15_RS07575 (CEG15_07575) | - | 1693373..1694740 (+) | 1368 | WP_088728919.1 | L-cystine transporter | - |
| CEG15_RS07580 (CEG15_07580) | sbcB | 1694892..1696316 (+) | 1425 | WP_088728920.1 | exodeoxyribonuclease I | Machinery gene |
| CEG15_RS07585 (CEG15_07585) | - | 1696441..1696773 (+) | 333 | WP_033197434.1 | CidA/LrgA family protein | - |
| CEG15_RS07590 (CEG15_07590) | - | 1696773..1697453 (+) | 681 | WP_010319624.1 | CidB/LrgB family autolysis modulator | - |
| CEG15_RS07595 (CEG15_07595) | cdd | 1697662..1698549 (+) | 888 | WP_017047013.1 | cytidine deaminase | - |
Sequence
Protein
Download Length: 474 a.a. Molecular weight: 54649.12 Da Isoelectric Point: 5.4372
>NTDB_id=236733 CEG15_RS07580 WP_088728920.1 1694892..1696316(+) (sbcB) [Vibrio anguillarum strain S3 4/9]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSSMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTAENAD
HIGVDRNLCLEHLALIKQYPEIREKLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSSMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTAENAD
HIGVDRNLCLEHLALIKQYPEIREKLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS
Nucleotide
Download Length: 1425 bp
>NTDB_id=236733 CEG15_RS07580 WP_088728920.1 1694892..1696316(+) (sbcB) [Vibrio anguillarum strain S3 4/9]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGCGAACCACTGGTCATCTATTGCCAACCACCAGCGG
ACTATTTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACTCCACAAAAAGCGGTGGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGTCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTACACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCGCTACGCCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGCTGGAGCATCTCTCAGTTGCCAATGGCATCGAACATGCAAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTAGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGAGTATGTTAGGCCGAGAATGCCAATAT
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCCCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCATCAAGCAGTACCCTGAGATCAGAGAAAAGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCAG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGACCCAGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTGACATTAAGTGACGAAGAGCAAAGACGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTCGAAGACATCGCGAGTTAA
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGCGAACCACTGGTCATCTATTGCCAACCACCAGCGG
ACTATTTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACTCCACAAAAAGCGGTGGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGTCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTACACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCGCTACGCCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGCTGGAGCATCTCTCAGTTGCCAATGGCATCGAACATGCAAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTAGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGAGTATGTTAGGCCGAGAATGCCAATAT
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCCCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCATCAAGCAGTACCCTGAGATCAGAGAAAAGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCAG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGACCCAGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTGACATTAAGTGACGAAGAGCAAAGACGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTCGAAGACATCGCGAGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
81.184 |
99.789 |
0.81 |