Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CEG15_RS02265 Genome accession   NZ_CP022099
Coordinates   448246..449247 (+) Length   333 a.a.
NCBI ID   WP_017047531.1    Uniprot ID   -
Organism   Vibrio anguillarum strain S3 4/9     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 443246..454247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS02235 (CEG15_02235) ispD 443386..444117 (+) 732 WP_010320457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CEG15_RS02240 (CEG15_02240) ispF 444110..444595 (+) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CEG15_RS02245 (CEG15_02245) truD 444807..445850 (+) 1044 WP_420895539.1 tRNA pseudouridine(13) synthase TruD -
  CEG15_RS02250 (CEG15_02250) surE 445863..446609 (+) 747 WP_010320454.1 5'/3'-nucleotidase SurE -
  CEG15_RS02255 (CEG15_02255) - 446609..447235 (+) 627 WP_088728605.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  CEG15_RS02260 (CEG15_02260) nlpD 447241..448173 (+) 933 WP_198302685.1 murein hydrolase activator NlpD -
  CEG15_RS02265 (CEG15_02265) rpoS 448246..449247 (+) 1002 WP_017047531.1 RNA polymerase sigma factor RpoS Regulator
  CEG15_RS02270 (CEG15_02270) mutS 449380..451968 (-) 2589 WP_088728607.1 DNA mismatch repair protein MutS -
  CEG15_RS02275 (CEG15_02275) cysM 452212..453102 (-) 891 WP_088728608.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 38272.18 Da        Isoelectric Point: 4.4454

>NTDB_id=236715 CEG15_RS02265 WP_017047531.1 448246..449247(+) (rpoS) [Vibrio anguillarum strain S3 4/9]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
ANNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ
GLNMEALFNVEYD

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=236715 CEG15_RS02265 WP_017047531.1 448246..449247(+) (rpoS) [Vibrio anguillarum strain S3 4/9]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGATTTGACGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCCCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCTTAGCTTTACTCGATCTAATTGAAGAGGGTAATTTAGGCTTGATCCGTGCGGTAGAAAAAT
TTGATCCAGAACGTGGCTTTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAAC
CAAACGCGCACTATCCGTTTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGTACGGCTCGCGAGCTATCGCA
GAAGTTAGATCATGAACCTACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTGC
GTCTTAACGAGCGTATCAGTTCTGTTGATACACCGATTGGCGGCGATGGTGATAAAGCACTACTCGATATCATCCCAGAT
GCGAACAACTCTGATCCTGAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTGAA
CCCAAAACAAAAAGAGGTACTTGCACGCCGTTTTGGGCTATTAGGTTATGAACCGTCCACCTTAGAAGAAGTAGGGCGCG
AAATTAACTTAACTCGTGAACGAGTTCGTCAAATTCAAGTGGAAGGCCTACGTCGTTTGAGAGAGATCTTGGTTAAACAA
GGCTTGAACATGGAAGCGCTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(174-247)

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

86.826

100

0.871

Multiple sequence alignment