Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CEP67_RS09445 Genome accession   NZ_CP022096
Coordinates   2013908..2015278 (+) Length   456 a.a.
NCBI ID   WP_002471482.1    Uniprot ID   -
Organism   Staphylococcus pettenkoferi strain FDAARGOS_288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2008908..2020278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP67_RS09425 (CEP67_09450) - 2009038..2009499 (+) 462 WP_002471510.1 CtsR family transcriptional regulator -
  CEP67_RS09430 (CEP67_09455) - 2009516..2010064 (+) 549 WP_002471472.1 UvrB/UvrC motif-containing protein -
  CEP67_RS09435 (CEP67_09460) - 2010057..2011067 (+) 1011 WP_088606549.1 protein arginine kinase -
  CEP67_RS09440 (CEP67_09465) - 2011079..2013562 (+) 2484 WP_002471474.1 ATP-dependent Clp protease ATP-binding subunit -
  CEP67_RS09445 (CEP67_09470) radA 2013908..2015278 (+) 1371 WP_002471482.1 DNA repair protein RadA Machinery gene
  CEP67_RS09450 (CEP67_09475) - 2015408..2016466 (+) 1059 WP_002471519.1 PIN/TRAM domain-containing protein -
  CEP67_RS09455 (CEP67_09480) gltX 2017057..2018511 (+) 1455 WP_002471480.1 glutamate--tRNA ligase -
  CEP67_RS09460 (CEP67_09485) cysE 2019052..2019681 (+) 630 WP_049408674.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50269.60 Da        Isoelectric Point: 7.5079

>NTDB_id=236661 CEP67_RS09445 WP_002471482.1 2013908..2015278(+) (radA) [Staphylococcus pettenkoferi strain FDAARGOS_288]
MAKKKVVFECMACGYQSAKWMGKCPSCGAWNQMEEVVERKESSPKHGVRRRESHSKVQKLNEVHHETRPRIKSKSEEFNR
VLGGGIVTGSLVLIGGDPGIGKSTLLLQICAALSQSYSVLYITGEESLNQTKIRADRLDEDSSNLNVFAETDLEIIHDTV
VKLKPDLLVVDSIQTVFHPDISSAPGSVSQVRESTQSLMNIAKQNNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGVIISTASSFKDQAVDGLDCFVGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRIIIPESNIGGWTFPESIQVIGVKNVHEALSFALGRG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=236661 CEP67_RS09445 WP_002471482.1 2013908..2015278(+) (radA) [Staphylococcus pettenkoferi strain FDAARGOS_288]
GTGGCGAAGAAGAAAGTAGTCTTTGAATGTATGGCATGTGGTTACCAATCAGCTAAATGGATGGGTAAATGCCCAAGTTG
CGGTGCTTGGAACCAAATGGAAGAGGTCGTTGAACGCAAAGAGTCAAGTCCGAAACATGGCGTGCGACGCCGTGAATCTC
ATTCCAAAGTGCAGAAATTAAACGAAGTGCATCATGAAACGAGGCCTAGAATTAAAAGTAAATCAGAAGAGTTCAATCGT
GTACTCGGTGGCGGAATCGTAACAGGATCACTCGTGCTTATTGGCGGGGATCCAGGTATAGGTAAATCGACGCTCTTACT
TCAAATTTGTGCTGCGTTATCGCAGTCTTACAGCGTACTTTATATCACAGGTGAGGAATCCCTCAACCAAACGAAGATTC
GTGCAGATCGTCTCGATGAAGATTCCAGCAACTTGAACGTCTTTGCAGAAACAGATTTAGAAATTATTCACGATACCGTA
GTTAAATTGAAGCCTGATTTACTCGTCGTTGACTCTATTCAAACTGTCTTTCATCCAGACATCAGTTCAGCGCCAGGTTC
CGTATCTCAAGTTCGCGAAAGTACGCAGAGCTTAATGAATATCGCGAAACAGAACAACATTGCTACATTCATCGTCGGTC
ACGTGACGAAAGAAGGTCAAATTGCAGGACCACGTTTACTTGAGCACATGGTGGATACAGTACTTTACTTTGAAGGTGAC
GAACACCATGCTTACCGTATCTTACGTGCAGTGAAGAACCGTTTCGGCTCAACGAACGAAATGGGTATCTTTGAGATGAA
ACAAAGTGGTCTGAAAGGGGTCAAGAACCCTTCAGAAATGTTTCTCGAAGAACGCTCAACCAACGTGCCAGGTTCAACTA
TTGTTTCCACTATGGAAGGTACGAGACCGTTGTTAATCGAAGTACAAGCACTCGTGACGCCTACGACTTTTAACAACCCA
AGACGTATGGCTACGGGCATTGATCATAATCGTTTGAGCTTGCTCATGGCTGTGCTTGAGAAGAAAGAGAACTATCTCCT
GCAACAACAAGATGCTTATATTAAAGTGGCAGGCGGAGTTAGACTGACAGAACCAGCCGTCGATTTAGGCGTGATTATTT
CTACAGCTTCAAGCTTTAAAGACCAGGCTGTAGACGGGTTAGACTGTTTCGTTGGAGAGGTCGGTTTAACCGGAGAAGTT
AGACGTGTATCACGTATCGAGCAACGTGTGCAGGAAGCGGCTAAACTTGGTTTCAAACGTATTATTATACCAGAATCTAA
TATTGGAGGATGGACTTTCCCAGAATCGATTCAAGTCATCGGTGTGAAGAACGTCCATGAAGCCTTGAGCTTTGCTTTAG
GCAGAGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.87

100

0.664
  radA Streptococcus pneumoniae Rx1

59.911

98.465

0.59
  radA Streptococcus pneumoniae D39

59.911

98.465

0.59
  radA Streptococcus pneumoniae R6

59.911

98.465

0.59
  radA Streptococcus pneumoniae TIGR4

59.911

98.465

0.59
  radA Streptococcus mitis NCTC 12261

59.911

98.465

0.59
  radA Streptococcus mitis SK321

59.911

98.465

0.59

Multiple sequence alignment