Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MS_RS03665 Genome accession   NC_006300
Coordinates   765274..766227 (+) Length   317 a.a.
NCBI ID   WP_011199971.1    Uniprot ID   Q65UG1
Organism   [Mannheimia] succiniciproducens MBEL55E     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 760274..771227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS_RS03645 (MS0787) metF 760861..761742 (+) 882 WP_011199966.1 methylenetetrahydrofolate reductase -
  MS_RS03650 (MS0789) znuB 761849..762634 (-) 786 WP_011199968.1 zinc ABC transporter permease subunit ZnuB -
  MS_RS03655 (MS0790) znuC 762646..763440 (-) 795 WP_041639619.1 zinc ABC transporter ATP-binding protein ZnuC -
  MS_RS03660 (MS0791) mepM 763688..765157 (+) 1470 WP_011199970.1 murein DD-endopeptidase MepM -
  MS_RS03665 (MS0792) ceuB 765274..766227 (+) 954 WP_011199971.1 ABC transporter permease Machinery gene
  MS_RS03670 (MS0793) - 766220..767200 (+) 981 WP_050738251.1 iron chelate uptake ABC transporter family permease subunit -
  MS_RS03675 (MS0794) - 767191..767955 (+) 765 WP_011199973.1 ABC transporter ATP-binding protein -
  MS_RS03680 (MS0795) - 767979..768887 (+) 909 WP_041639622.1 siderophore ABC transporter substrate-binding protein -
  MS_RS03685 (MS0796) adk 768962..769606 (-) 645 WP_011199975.1 adenylate kinase -
  MS_RS03690 (MS0797) - 769683..770945 (-) 1263 WP_011199976.1 AmpG family muropeptide MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35071.28 Da        Isoelectric Point: 10.0324

>NTDB_id=23666 MS_RS03665 WP_011199971.1 765274..766227(+) (ceuB) [[Mannheimia] succiniciproducens MBEL55E]
MIHRRYLILLLLLLSIISLFLGVSSVNLKGLLYFNSEQWQILLISRVPRLISILIAGSALSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILISMLVFPTASMLFKTVIAIVVSFLGTLLFMTILSRLKFKDSIFVPLVGIMFGNIISSVTAFIAYQQDI
LQNLSGWLQGDFSLIMSGRYEILYFSIPALITAYLFANRFSIVGMGQDFAVNLGLNYQQVLYLGLAIVATVSSIIIVSVG
VIPFLGLIIPNLVTLYLGDNLKKILSHTALLGAVFVLFCDIFGRIVIYPYEIAINAVVGVFGSAIFLYLLFKRYRHV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=23666 MS_RS03665 WP_011199971.1 765274..766227(+) (ceuB) [[Mannheimia] succiniciproducens MBEL55E]
ATGATCCATCGTCGTTATTTAATTTTATTACTTCTCTTATTATCTATAATTTCTTTATTCCTCGGTGTGAGCTCGGTTAA
TCTTAAGGGATTACTGTATTTTAACAGTGAGCAGTGGCAAATTCTGTTAATTAGCCGCGTTCCCCGTTTAATCAGTATTT
TAATTGCCGGTTCGGCACTAAGTATTTGCGGCCTTGTTATGCAGCAATTGAGCCGTAATCGCTTTGTTTCGCCTACCACC
GCGGGCACGATGGACAGCGCACGTCTTGGTATTCTTATTTCGATGCTGGTTTTTCCCACCGCTTCTATGCTGTTTAAAAC
GGTGATCGCAATTGTCGTTTCTTTTCTCGGCACCTTATTGTTTATGACAATCCTCTCCCGCCTTAAATTTAAGGATAGTA
TTTTCGTGCCTTTGGTCGGCATTATGTTCGGCAATATTATCAGTTCCGTTACCGCATTTATTGCCTATCAGCAGGATATT
CTGCAGAATTTATCGGGCTGGTTGCAGGGTGATTTTTCATTGATTATGAGCGGACGTTATGAAATTCTTTATTTCAGCAT
TCCCGCCTTGATTACGGCTTATTTGTTTGCCAATCGGTTTTCTATTGTGGGTATGGGACAGGATTTTGCGGTCAATCTCG
GTTTGAATTATCAGCAGGTGCTATATCTCGGTTTGGCCATTGTTGCCACGGTATCTTCGATTATTATTGTGTCCGTAGGC
GTGATTCCGTTTCTCGGCTTGATTATTCCTAATTTAGTCACGCTGTATTTGGGGGATAATCTGAAAAAAATCCTTTCTCA
TACCGCACTTTTAGGCGCCGTTTTTGTTTTGTTTTGCGATATTTTCGGGCGCATTGTGATTTATCCTTATGAAATTGCCA
TCAATGCGGTTGTAGGTGTATTCGGCAGTGCTATTTTCTTATATTTGTTATTTAAGCGGTATCGGCATGTTTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65UG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.128

98.423

0.543

Multiple sequence alignment