Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   CEP67_RS04150 Genome accession   NZ_CP022096
Coordinates   866816..867532 (+) Length   238 a.a.
NCBI ID   WP_088606354.1    Uniprot ID   -
Organism   Staphylococcus pettenkoferi strain FDAARGOS_288     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 861816..872532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP67_RS04130 (CEP67_04140) - 863228..864013 (+) 786 WP_002471741.1 carbon-nitrogen family hydrolase -
  CEP67_RS04135 (CEP67_04145) - 864773..865348 (+) 576 WP_049409366.1 accessory gene regulator AgrB -
  CEP67_RS04140 (CEP67_04150) agrD 865345..865482 (+) 138 WP_002471753.1 cyclic lactone autoinducer peptide AgrD -
  CEP67_RS12255 (CEP67_04155) agrC 865509..866801 (+) 1293 WP_040806435.1 quorum-sensing sensor histidine kinase AgrC -
  CEP67_RS04150 (CEP67_04160) agrA 866816..867532 (+) 717 WP_088606354.1 quorum-sensing response regulator AgrA Regulator
  CEP67_RS04155 (CEP67_04165) - 867646..868617 (-) 972 WP_002471764.1 carbohydrate kinase family protein -
  CEP67_RS04160 (CEP67_04170) - 868617..870098 (-) 1482 WP_002471754.1 sucrose-6-phosphate hydrolase -
  CEP67_RS04165 (CEP67_04175) - 870182..871198 (-) 1017 WP_002471756.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27848.62 Da        Isoelectric Point: 5.0980

>NTDB_id=236649 CEP67_RS04150 WP_088606354.1 866816..867532(+) (agrA) [Staphylococcus pettenkoferi strain FDAARGOS_288]
MKIFICEDDIKQRESIESIINNYIMIEEKPMKVEMSTDDSYAVLERSKEINDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVSAMDFIFKDEPNELQKRIIDCLETSEARLKLLSKESNVETIELKRGSNSAYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKSRTVYFKNGEECYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=236649 CEP67_RS04150 WP_088606354.1 866816..867532(+) (agrA) [Staphylococcus pettenkoferi strain FDAARGOS_288]
TTGAAAATATTCATTTGTGAAGATGATATTAAGCAACGTGAAAGTATTGAATCCATCATTAATAACTATATTATGATTGA
GGAAAAACCGATGAAGGTTGAGATGTCTACGGATGATTCTTATGCAGTACTTGAGCGTTCTAAAGAAATTAATGACATCG
GTTGTTACTTTTTAGATATTCAACTAGAAGCGGACATGAACGGAATTAAGCTTGCGAGTGAGATTCGTAAACATGACCCT
GTCGGCAATATCATTTTCGTAACAAGTCATAGTGAGCTCACTTATCTCACTTTCGTTTACAAAGTGTCCGCAATGGACTT
TATTTTCAAAGATGAGCCAAATGAGTTACAGAAACGTATTATTGATTGTCTGGAAACATCTGAAGCACGTCTTAAACTGC
TCAGTAAAGAGAGTAATGTTGAAACGATCGAGTTGAAACGCGGTAGCAACTCCGCCTATGTACAATACGATGACGTGATG
TTCTTTGAATCATCTTCCAAATCCCATCGACTTATCGCTCATTTAGATAATCGACAAATTGAATTCTACGGCAACCTGAA
AGAACTGAGTCAGCTGGATGACCGTTTCTTTAGATGTCACAACAGCTTTGTCGTTAATCGACACAATATCGAGTCGATCG
ATTCGAAGTCACGTACTGTTTACTTTAAAAATGGTGAAGAGTGTTATGCTTCTGTCCGTAACGTGAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(153-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.773

100

0.828

Multiple sequence alignment