Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C7A06_RS22015 Genome accession   NZ_CP027599
Coordinates   3910750..3911379 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 97-3250     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3905750..3916379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A06_RS22000 helD 3905992..3908046 (-) 2055 WP_001297106.1 DNA helicase IV -
  C7A06_RS22005 yccF 3908169..3908615 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C7A06_RS22010 yccS 3908625..3910787 (+) 2163 WP_000875023.1 YccS family putative transporter -
  C7A06_RS22015 sxy/tfoX 3910750..3911379 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C7A06_RS22020 sulA 3911598..3912107 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C7A06_RS22030 ompA 3912464..3913504 (+) 1041 WP_000750416.1 porin OmpA -
  C7A06_RS22035 matP 3913579..3914031 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C7A06_RS22040 ycbZ 3914217..3915977 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=236565 C7A06_RS22015 WP_000839153.1 3910750..3911379(-) (sxy/tfoX) [Escherichia coli strain 97-3250]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=236565 C7A06_RS22015 WP_000839153.1 3910750..3911379(-) (sxy/tfoX) [Escherichia coli strain 97-3250]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment