Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C7A06_RS12265 Genome accession   NZ_CP027599
Coordinates   2265405..2266832 (-) Length   475 a.a.
NCBI ID   WP_000980546.1    Uniprot ID   -
Organism   Escherichia coli strain 97-3250     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2260405..2271832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A06_RS12235 yeeZ 2260460..2261284 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  C7A06_RS12240 yeeY 2261330..2262259 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C7A06_RS12245 yoeI 2262474..2262536 (+) 63 WP_010723108.1 membrane protein YoeI -
  C7A06_RS12250 plaP 2262526..2263884 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C7A06_RS12255 tsuA 2264063..2265121 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  C7A06_RS12260 tsuB 2265135..2265362 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C7A06_RS12265 sbcB 2265405..2266832 (-) 1428 WP_000980546.1 exodeoxyribonuclease I Machinery gene
  C7A06_RS12270 dacD 2267041..2268207 (+) 1167 WP_000830141.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C7A06_RS12275 sbmC 2268325..2268798 (+) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  C7A06_RS12280 yeeA 2268996..2270054 (+) 1059 WP_001200883.1 FUSC family protein -
  C7A06_RS12285 tmaR 2270226..2270555 (+) 330 WP_000450409.1 DUF496 family protein -
  C7A06_RS34940 - 2270656..2271021 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  C7A06_RS34945 - 2271292..2271663 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54528.82 Da        Isoelectric Point: 5.3498

>NTDB_id=236551 C7A06_RS12265 WP_000980546.1 2265405..2266832(-) (sbcB) [Escherichia coli strain 97-3250]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=236551 C7A06_RS12265 WP_000980546.1 2265405..2266832(-) (sbcB) [Escherichia coli strain 97-3250]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579