Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C7A06_RS06540 Genome accession   NZ_CP027599
Coordinates   1227591..1228106 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 97-3250     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1222591..1233106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A06_RS06495 csrA 1223311..1223496 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C7A06_RS06525 yqaB 1224821..1225387 (+) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C7A06_RS06530 yqaA 1225384..1225812 (+) 429 WP_001287457.1 YqaA family protein -
  C7A06_RS06535 gshA 1225885..1227441 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C7A06_RS06540 luxS 1227591..1228106 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  C7A06_RS06545 emrB 1228170..1229708 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C7A06_RS06550 emrA 1229725..1230897 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C7A06_RS06555 emrR 1231024..1231554 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C7A06_RS06560 ygaH 1231645..1231980 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C7A06_RS06565 ygaZ 1231970..1232707 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=236540 C7A06_RS06540 WP_001130207.1 1227591..1228106(+) (luxS) [Escherichia coli strain 97-3250]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=236540 C7A06_RS06540 WP_001130207.1 1227591..1228106(+) (luxS) [Escherichia coli strain 97-3250]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731