Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   A6J94_RS02375 Genome accession   NZ_CP022080
Coordinates   483085..483816 (-) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni strain FDAARGOS_266     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 478085..488816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J94_RS02335 (A6J94_02335) - 478199..478960 (+) 762 WP_002856328.1 ATP-binding protein -
  A6J94_RS02340 (A6J94_02340) - 478957..479643 (+) 687 WP_002869046.1 3-methyladenine DNA glycosylase -
  A6J94_RS02345 (A6J94_02345) thiD 479640..480452 (+) 813 WP_012006730.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  A6J94_RS02350 (A6J94_02350) thiE 480442..481074 (+) 633 WP_002856400.1 thiamine phosphate synthase -
  A6J94_RS02355 (A6J94_02355) hemD 481052..481681 (+) 630 WP_002856298.1 uroporphyrinogen-III synthase -
  A6J94_RS02360 (A6J94_02360) - 481678..482130 (-) 453 WP_002869049.1 hypothetical protein -
  A6J94_RS02365 (A6J94_02365) - 482127..482789 (-) 663 WP_012006728.1 hypothetical protein -
  A6J94_RS02370 (A6J94_02370) ctsT 482786..483088 (-) 303 WP_002877750.1 hypothetical protein Machinery gene
  A6J94_RS02375 (A6J94_02375) proC 483085..483816 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  A6J94_RS02380 (A6J94_02380) fliW 483816..484205 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  A6J94_RS02385 (A6J94_02385) - 484366..485013 (+) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  A6J94_RS02390 (A6J94_02390) lon 485030..487405 (+) 2376 WP_012006726.1 endopeptidase La -
  A6J94_RS02395 (A6J94_02395) rpsR 487466..487726 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  A6J94_RS02400 (A6J94_02400) ssb 487737..488288 (-) 552 WP_002856575.1 single-stranded DNA-binding protein -
  A6J94_RS02405 (A6J94_02405) rpsF 488297..488674 (-) 378 WP_002812868.1 30S ribosomal protein S6 -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=236519 A6J94_RS02375 WP_002859150.1 483085..483816(-) (proC) [Campylobacter jejuni strain FDAARGOS_266]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=236519 A6J94_RS02375 WP_002859150.1 483085..483816(-) (proC) [Campylobacter jejuni strain FDAARGOS_266]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996


Multiple sequence alignment