Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | A6J94_RS02005 | Genome accession | NZ_CP022080 |
| Coordinates | 410915..411865 (-) | Length | 316 a.a. |
| NCBI ID | WP_002866164.1 | Uniprot ID | Q9ALT6 |
| Organism | Campylobacter jejuni strain FDAARGOS_266 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 395995..446002 | 410915..411865 | within | 0 |
Gene organization within MGE regions
Location: 395995..446002
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J94_RS01935 (A6J94_01935) | - | 395995..396189 (+) | 195 | WP_002870481.1 | cation transporter | - |
| A6J94_RS01940 (A6J94_01940) | copA | 396189..398288 (+) | 2100 | WP_002866176.1 | copper-translocating P-type ATPase CopA | - |
| A6J94_RS01945 (A6J94_01945) | - | 398360..398881 (+) | 522 | WP_002853472.1 | DUF2165 family protein | - |
| A6J94_RS01950 (A6J94_01950) | dnaX | 398878..400407 (-) | 1530 | WP_002866174.1 | DNA polymerase III subunit gamma/tau | - |
| A6J94_RS01955 (A6J94_01955) | rho | 400411..401709 (-) | 1299 | WP_002853705.1 | transcription termination factor Rho | - |
| A6J94_RS01960 (A6J94_01960) | - | 401819..404176 (+) | 2358 | WP_072238644.1 | heavy metal translocating P-type ATPase | - |
| A6J94_RS01965 (A6J94_01965) | ccoS | 404173..404379 (+) | 207 | WP_002877126.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| A6J94_RS01970 (A6J94_01970) | - | 404402..404704 (-) | 303 | WP_002852762.1 | cytochrome c | - |
| A6J94_RS01975 (A6J94_01975) | gmhB | 404786..405346 (+) | 561 | WP_002877124.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| A6J94_RS01980 (A6J94_01980) | rfaD | 405347..406300 (+) | 954 | WP_002877123.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| A6J94_RS01985 (A6J94_01985) | rfaE1 | 406293..407678 (+) | 1386 | WP_002877121.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| A6J94_RS01990 (A6J94_01990) | gmhA | 407675..408235 (+) | 561 | WP_002877119.1 | D-sedoheptulose 7-phosphate isomerase | - |
| A6J94_RS01995 (A6J94_01995) | - | 408239..409216 (-) | 978 | WP_002866168.1 | hypothetical protein | - |
| A6J94_RS02000 (A6J94_02000) | - | 409364..410863 (-) | 1500 | WP_002877116.1 | MBOAT family O-acyltransferase | - |
| A6J94_RS02005 (A6J94_02005) | waaF | 410915..411865 (-) | 951 | WP_002866164.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| A6J94_RS02010 (A6J94_02010) | - | 411924..412742 (+) | 819 | WP_002866163.1 | glycosyltransferase family 2 protein | - |
| A6J94_RS02015 (A6J94_02015) | wlaTC | 412745..413704 (-) | 960 | WP_012006735.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| A6J94_RS02020 (A6J94_02020) | wlaTB | 413701..414657 (-) | 957 | WP_088592083.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| A6J94_RS02025 (A6J94_02025) | - | 414650..415423 (-) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| A6J94_RS02030 (A6J94_02030) | - | 415606..416508 (+) | 903 | WP_002866159.1 | hypothetical protein | - |
| A6J94_RS02035 (A6J94_02035) | - | 416505..417758 (+) | 1254 | WP_002866158.1 | DUF2972 domain-containing protein | - |
| A6J94_RS02040 (A6J94_02040) | wlaRG | 417792..418877 (-) | 1086 | WP_032603539.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| A6J94_RS02045 (A6J94_02045) | - | 418843..419895 (-) | 1053 | WP_041176357.1 | glycosyltransferase family A protein | - |
| A6J94_RS02050 (A6J94_02050) | - | 419907..420971 (-) | 1065 | WP_002866155.1 | glycosyltransferase family 2 protein | - |
| A6J94_RS02055 (A6J94_02055) | wlaRD | 420990..421808 (-) | 819 | WP_002866154.1 | class E lipooligosaccharide biosynthesis sugar-formyltransferase WlaRD | - |
| A6J94_RS02060 (A6J94_02060) | - | 421801..422271 (-) | 471 | WP_002932643.1 | acyltransferase | - |
| A6J94_RS02065 (A6J94_02065) | wlaRB | 422261..422668 (-) | 408 | WP_002866152.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| A6J94_RS02070 (A6J94_02070) | wlaRA | 422676..423113 (-) | 438 | WP_052799583.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| A6J94_RS02075 (A6J94_02075) | rfbB | 423116..424147 (-) | 1032 | WP_002866149.1 | dTDP-glucose 4,6-dehydratase | - |
| A6J94_RS02080 (A6J94_02080) | rfbA | 424147..425025 (-) | 879 | WP_002866148.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| A6J94_RS02085 (A6J94_02085) | - | 425036..425737 (-) | 702 | WP_002877056.1 | glycosyltransferase family 2 protein | - |
| A6J94_RS02090 (A6J94_02090) | htrB | 425734..426612 (-) | 879 | WP_002801091.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| A6J94_RS02095 (A6J94_02095) | waaC | 426602..427630 (-) | 1029 | WP_002866145.1 | lipopolysaccharide heptosyltransferase I | - |
| A6J94_RS02100 (A6J94_02100) | - | 427696..428490 (+) | 795 | WP_002877059.1 | 3'-5' exonuclease | - |
| A6J94_RS02105 (A6J94_02105) | galE | 428549..429535 (+) | 987 | WP_002877060.1 | UDP-glucose 4-epimerase GalE | - |
| A6J94_RS02110 (A6J94_02110) | pglK | 429529..431223 (+) | 1695 | WP_002877063.1 | ABC-type lipopolysaccharide transporter PglK | - |
| A6J94_RS02115 (A6J94_02115) | pglH | 431220..432299 (+) | 1080 | WP_072238645.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| A6J94_RS02120 (A6J94_02120) | pglI | 432292..433221 (+) | 930 | WP_002866141.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| A6J94_RS02125 (A6J94_02125) | pglJ | 433209..434306 (+) | 1098 | WP_002866140.1 | N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase | - |
| A6J94_RS02130 (A6J94_02130) | pglB | 434310..436451 (+) | 2142 | WP_002866139.1 | undecaprenyl-diphosphooligosaccharide--protein glycotransferase | - |
| A6J94_RS02135 (A6J94_02135) | pglA | 436461..437591 (+) | 1131 | WP_002866138.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| A6J94_RS02140 (A6J94_02140) | pglC | 437584..438186 (+) | 603 | WP_002853498.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| A6J94_RS02145 (A6J94_02145) | pglD | 438173..438763 (+) | 591 | WP_002853531.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| A6J94_RS02150 (A6J94_02150) | pglE | 438861..440021 (+) | 1161 | WP_002866137.1 | UDP-N-acetylbacillosamine transaminase | - |
| A6J94_RS02155 (A6J94_02155) | pglF | 440023..441795 (+) | 1773 | WP_002866136.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| A6J94_RS02160 (A6J94_02160) | pglG | 441795..442688 (+) | 894 | WP_002866135.1 | PDC sensor domain-containing protein | - |
| A6J94_RS02165 (A6J94_02165) | cheY | 442801..443193 (+) | 393 | WP_002866134.1 | chemotaxis response regulator CheY | - |
| A6J94_RS02170 (A6J94_02170) | prmA | 443216..444061 (+) | 846 | WP_002866133.1 | 50S ribosomal protein L11 methyltransferase | - |
| A6J94_RS02175 (A6J94_02175) | ftsH | 444065..446002 (+) | 1938 | WP_002853468.1 | ATP-dependent zinc metalloprotease FtsH | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36378.95 Da Isoelectric Point: 10.3102
>NTDB_id=236516 A6J94_RS02005 WP_002866164.1 410915..411865(-) (waaF) [Campylobacter jejuni strain FDAARGOS_266]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=236516 A6J94_RS02005 WP_002866164.1 410915..411865(-) (waaF) [Campylobacter jejuni strain FDAARGOS_266]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.249 |
99.051 |
0.934 |