Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   A6J94_RS01110 Genome accession   NZ_CP022080
Coordinates   229330..230298 (-) Length   322 a.a.
NCBI ID   WP_002898677.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_266     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 224330..235298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J94_RS01075 (A6J94_01075) - 225067..225621 (+) 555 WP_002866776.1 membrane protein -
  A6J94_RS01085 (A6J94_01085) - 225983..226264 (-) 282 WP_002866775.1 type II toxin-antitoxin system RelE/ParE family toxin -
  A6J94_RS01090 (A6J94_01090) - 226265..226486 (-) 222 WP_002866774.1 hypothetical protein -
  A6J94_RS01095 (A6J94_01095) ceuB 226642..227634 (-) 993 WP_002866773.1 enterochelin ABC transporter substrate-binding protein CeuB -
  A6J94_RS01100 (A6J94_01100) ceuD 227647..228402 (-) 756 WP_002866772.1 ABC transporter ATP-binding protein -
  A6J94_RS01105 (A6J94_01105) ceuC 228399..229337 (-) 939 WP_002866771.1 iron chelate uptake ABC transporter family permease subunit -
  A6J94_RS01110 (A6J94_01110) ceuB 229330..230298 (-) 969 WP_002898677.1 ABC transporter permease Machinery gene
  A6J94_RS01115 (A6J94_01115) pldA 230384..231373 (-) 990 WP_002866769.1 phospholipase A -
  A6J94_RS01120 (A6J94_01120) mobA 231370..231945 (-) 576 WP_002866768.1 molybdenum cofactor guanylyltransferase -
  A6J94_RS01125 (A6J94_01125) - 232007..233314 (+) 1308 WP_012006755.1 NFACT family protein -
  A6J94_RS01130 (A6J94_01130) - 233316..233654 (+) 339 WP_002855905.1 hypothetical protein -
  A6J94_RS01135 (A6J94_01135) cdsA 233663..234388 (+) 726 WP_002866765.1 phosphatidate cytidylyltransferase -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35411.32 Da        Isoelectric Point: 9.6678

>NTDB_id=236511 A6J94_RS01110 WP_002898677.1 229330..230298(-) (ceuB) [Campylobacter jejuni strain FDAARGOS_266]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDVALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=236511 A6J94_RS01110 WP_002898677.1 229330..230298(-) (ceuB) [Campylobacter jejuni strain FDAARGOS_266]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATG
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains


Predicted by InterproScan.

(15-317)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994


Multiple sequence alignment