Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   A6J94_RS00820 Genome accession   NZ_CP022080
Coordinates   168534..169718 (+) Length   394 a.a.
NCBI ID   WP_012006763.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_266     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 163534..174718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J94_RS00800 (A6J94_00800) aepX 163673..164996 (+) 1324 Protein_158 phosphoenolpyruvate mutase -
  A6J94_RS00805 (A6J94_00805) aepY 164996..166192 (+) 1197 WP_012006765.1 phosphonopyruvate decarboxylase -
  A6J94_RS00810 (A6J94_00810) - 166185..167240 (+) 1056 WP_012006764.1 phosphonoacetaldehyde reductase -
  A6J94_RS00815 (A6J94_00815) - 167440..168537 (+) 1098 Protein_161 capsular polysaccharide biosynthesis protein -
  A6J94_RS00820 (A6J94_00820) kpsS 168534..169718 (+) 1185 WP_012006763.1 capsule polysaccharide modification protein KpsS Regulator
  A6J94_RS00825 (A6J94_00825) - 169791..170912 (+) 1122 WP_002866682.1 hypothetical protein -
  A6J94_RS00830 (A6J94_00830) - 170909..172270 (+) 1362 WP_002866683.1 cytochrome P450 -
  A6J94_RS00835 (A6J94_00835) - 172267..172686 (+) 420 WP_002862076.1 hypothetical protein -
  A6J94_RS00840 (A6J94_00840) acpS 172687..173034 (-) 348 WP_002866684.1 holo-ACP synthase -
  A6J94_RS00845 (A6J94_00845) fliL 173034..173570 (-) 537 WP_002855429.1 flagellar basal body-associated protein FliL -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46916.64 Da        Isoelectric Point: 9.8632

>NTDB_id=236509 A6J94_RS00820 WP_012006763.1 168534..169718(+) (kpsS) [Campylobacter jejuni strain FDAARGOS_266]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELEIEVWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQDIFTKESIKEILGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEQTILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPILVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=236509 A6J94_RS00820 WP_012006763.1 168534..169718(+) (kpsS) [Campylobacter jejuni strain FDAARGOS_266]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATGAAAATGAAAAAAAACCAAACCAAAGTTTTTAAACTCAATTTTAATGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACAAGGTGTAAGTGTGATGAAAAAGATCTTGAAAATTTCTATAGGGATTTTTTTCAAAGTAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGCATTATACATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGAAATTGAAGT
ATGGATTTTTGAAGAAGGGTATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAGGATATTTTTACCAAAGAAAGCATAAAAGAAATTCTAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGTAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGCAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGTTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTAGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGCGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAGAAGCTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCTAATCCTATTTTGGTATGTAATTTTAAGA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTACAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

96.954

100

0.97


Multiple sequence alignment