Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   A6J93_RS07485 Genome accession   NZ_CP022079
Coordinates   1402710..1403021 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain FDAARGOS_265     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1397710..1408021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J93_RS07465 (A6J93_07465) ctsE 1398579..1400138 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  A6J93_RS07470 (A6J93_07470) ctsX 1400128..1400715 (-) 588 WP_002851370.1 membrane protein Machinery gene
  A6J93_RS07475 (A6J93_07475) ctsP 1400719..1401327 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  A6J93_RS07480 (A6J93_07480) ctsD 1401320..1402732 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  A6J93_RS07485 (A6J93_07485) ctsR 1402710..1403021 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  A6J93_RS07490 (A6J93_07490) nifJ 1403045..1406605 (-) 3561 WP_002871858.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  A6J93_RS07495 (A6J93_07495) - 1406698..1407339 (-) 642 WP_002871857.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=236501 A6J93_RS07485 WP_002855438.1 1402710..1403021(-) (ctsR) [Campylobacter jejuni strain FDAARGOS_265]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=236501 A6J93_RS07485 WP_002855438.1 1402710..1403021(-) (ctsR) [Campylobacter jejuni strain FDAARGOS_265]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment